Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq13898 91.5 1e-13 seq6322 84.2 2e-11 >seq13898 Length=23741 Score = 91.5 bits (100), Expect = 1e-13 Identities = 85/108 (79%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 ||||||||||| | |||| || || ||||| |||| || |||||||||| ||||| Sbjct 7071 CAAGAAGTTCAGGTTACAGAGGCCCGCTGTTTCTATGTCTTCCAAATTGCCACGGAAAAC 7012 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGAT 44020 || ||||| |||||||||||||| | || || || ||||| |||||| Sbjct 7011 ATACATTCTGAAATGTACAGTCTCTTTATTGACACTTACATTAAAGAT 6964 >seq6322 Length=173588 Score = 84.2 bits (92), Expect = 2e-11 Identities = 140/202 (69%), Gaps = 4/202 (2%) Strand=Plus/Plus Query 44042 TTTAATGCGATAGAAACAGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGG 44101 || ||||| || || ||| | ||| | ||| | || || ||||||||||| ||| Sbjct 119590 TTCAATGCTATTGAGACAATGCCTTGTGTGAAAAAGAAGGCTGACTGGGCCCTGTGTTGG 119649 Query 44102 AT----AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGG 44157 || | | | | | | | | |||||||||| |||| | ||||| | ||| ||||| Sbjct 119650 ATTTGGAGACAAAGAGGCTACCTATGGAGAACGAGTTGTGACCTTTGCTGCTGTAGAAGG 119709 Query 44158 CATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCC 44217 || ||||| || || || ||||| | ||||| ||| | ||||||| || ||||||| Sbjct 119710 GATCTTCTTCTCTGGCTCTTTTGCATCAATATTCTGGCTCAAGAAACAGGGACTGATGCC 119769 Query 44218 TGGGTTGACGTTTTCAAATGAG 44239 ||| | || ||||| || ||| Sbjct 119770 TGGCCTTACATTTTCCAACGAG 119791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396340902663010