Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq66411 145 2e-29 seq26544 127 6e-24 seq2179 114 4e-20 seq4653 102 2e-16 seq7865 96.9 1e-14 seq1905 93.3 1e-13 >seq66411 Length=823 Score = 145 bits (160), Expect = 2e-29 Identities = 376/571 (66%), Gaps = 9/571 (2%) Strand=Plus/Minus Query 350081 CGTGCTCGGTTTGAAGAATTATGTATGGATCTTTTTAGAGCAACAATGGATCCTGTGGAA 350140 |||||||| |||||||||||| | || || ||| | | || |||| ||||| | Sbjct 821 CGTGCTCGATTTGAAGAATTAAATGCTGACCTGTTTCGGGGTACTCTGGACCCTGTAGTG 762 Query 350141 AAAGTATTAAAAGATGCAAAAATGTCCAAAAATCAGATTGATGAAGTAGTTTTAGTTGGT 350200 || | | | |||||| ||| | ||| |||| | |||| | || | || ||| Sbjct 761 AAGGCACTTCGAGATGCCAAACTAGACAAGTCTCAGGTCCATGATATTGTCCTGGTGGGT 702 Query 350201 GGTTCTACACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAA 350260 |||||||| | || || || |||| || | || || || || |||| ||||| Sbjct 701 GGTTCTACCAGAATCCCCAAGATTCAGAAGCTTCTGCAGGACTTCTTCAATGAAAAAGAG 642 Query 350261 CCTT-CTAGATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATC 350319 | | ||| | | ||||| |||||||||||||| |||||||| ||||| ||| || | Sbjct 641 CTGAACAAGAGTA-TCAATCCTGATGAAGCTGTTGCTTATGGTGCAGCTGTCCAGACAGC 583 Query 350320 TATTTTATCTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCC 350379 ||| |||||||| | ||| | || || | ||| | | || | |||| ||||| Sbjct 582 CATTCTATCTGGAGACAAGTCTGAGAATGTTCAGGATTTGCTGCTCTTGAATGTCACTCC 523 Query 350380 ACTTTCGCTTGGATTAGAAACTTCTGGTGAAGTAATGACTGTTCTTATTCCTAGAAATAG 350439 ||||| ||||| | |||||| ||||| ||| |||||||| || || | |||| Sbjct 522 TCTTTCCCTTGGTATTGAAACTGCTGGTAGAGTCATGACTGTCCTCATCATGCGCAATAC 463 Query 350440 TACTGTACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGT 350499 || | ||||| || || |||| ||||| | || | | ||||| |||| | || Sbjct 462 CACCATCCCTACCAAGCAGACCCAGACTTTCACCACCTACTCTGATAACCAGCAGGGTGT 403 Query 350500 AACAATTCAAGTATTTGAAGGTGAACGTGCTCGCACTAAAGATAATAATAAACTTGGAGA 350559 ||||| ||| |||| ||||||| || | ||||| || |||||| | Sbjct 402 GCTCATTCACATATATGAAAGTGAACGAGC-------CATGATAACAACCTGCTTGGAAA 350 Query 350560 ATTTACCCTAAGTGAAATTCCACCAATGCCTAGAGGAGTTCCTCAGATTGAAGTCTCTTT 350619 | | || | | | || ||| || | || ||||| |||||||||||| |||| Sbjct 349 GTATGAACTTACAGGTCTCCCTCCAGCACCATGTGGTGTTCCCCAGATTGAAGTCACTTT 290 Query 350620 CGATATTGATTCAAATGGTATTTTAAATGTT 350650 || |||||| | |||| || | |||||| Sbjct 289 TGACATTGATGCCCATGGCATCCTCAATGTT 259 >seq26544 Length=151321 Score = 127 bits (140), Expect = 6e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 |||| ||| || || ||| | || || | |||||||| | |||||| |||| ||||| Sbjct 103747 TTTTAAATGTTGTAGTCAAAGAAAGTAAGGCCATCTTCTACTTGTTTACCAGGGAAGATC 103688 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 || | || |||| ||||||||||||||||||||||||||| || || ||| ||| || Sbjct 103687 AGCCTCTGATGATTAGGAGGAATTCCTTCTTTATCCTGAATCTTGGCCCTTATATTTTCT 103628 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAA 140729 || | || || ||||||| |||||||| | || || || | || || || |||||| Sbjct 103627 ATAGTGTCTGAGGGTTCAATCTCAAGTGTGATAGTTTTCCCCCTAAGGGTCTTGACAAAA 103568 Query 140730 ATCTGCAT 140737 | |||||| Sbjct 103567 ACCTGCAT 103560 >seq2179 Length=1209437 Score = 114 bits (126), Expect = 4e-20 Identities = 162/228 (71%), Gaps = 11/228 (5%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||| | | || | ||| ||||||| |||||||| |||||||| || || ||| | Sbjct 81348 ACCACCATGAAGTCCCAACACAGGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCAAA 81289 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 ||| ||||||| || || || ||||||| || || | | || ||||||||| Sbjct 81288 GTATGG-----CATCTTCCAGCTGCTTACCAGCAAGGAGCAGCCTTAGCCAATCAGGAGG 81234 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 |||||| || | | |||| |||||| |||| || || | ||| || |||||||| Sbjct 81233 AATTCCCTCCTAAACCTGGATTTTACATTTT------TCTATAGCATCTGAGGGTTCAAC 81180 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || | || || |||| |||||||| || Sbjct 81179 CTCAAGGGTGATGGTCTTCCCCATAAGGGTCTTTATGAAAATCTGTAT 81132 Score = 113 bits (124), Expect = 1e-19 Identities = 162/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||| | | || | ||| | |||| ||||||||||||||||| || || ||| | Sbjct 665117 ACCACCATGAAGTCCCAACACAGGGTGAAAGGTAGACTCTTTTTGAATGTTGTAGTCAAA 665176 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 ||| |||||||| || || | ||||| || | || | | || |||| ||| Sbjct 665177 GTATGG----CCATCTTCCAGCTGCTAACCAGCCAAAAGCAGCCTTAGCCAATCAAGAGA 665232 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 | |||| |||||| |||| || | | ||||||||| || || | ||| || | |||| | Sbjct 665233 ATTTCCCTCTTTAACCTGGATCGTGGTTTTTACATTTTCTATAGCATCTGAGGATTCAGC 665292 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||||| || | ||||| || | || || |||||||||||||| || Sbjct 665293 CTCAAGGGTGATGGTCTTCCCCATAAGGGTCTTTACAAAAATCTGTAT 665340 >seq4653 Length=763133 Score = 102 bits (112), Expect = 2e-16 Identities = 102/131 (78%), Gaps = 1/131 (1%) Strand=Plus/Minus Query 349760 GaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACA 349819 ||||| ||||| || ||||||| || || ||||||||||| ||||| ||| | || || Sbjct 744992 GAAAAGAATATGCTC-TTTTTGACTTTGGAGGTGGTACTTTAGATGTGTCAATCCTCACT 744934 Query 349820 CTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAA 349879 |||| || | || |||| |||| ||| ||| ||||| || || || ||||||| |||| Sbjct 744933 ATTGAGGATGAAACTTTTAAAGTCAAATCAATAGCTGGAGACACCCACCTTGGTGTAGAA 744874 Query 349880 GATTTTGATAA 349890 || |||||||| Sbjct 744873 GACTTTGATAA 744863 >seq7865 Length=95967 Score = 96.9 bits (106), Expect = 1e-14 Identities = 85/106 (80%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 349608 ATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATG 349667 |||| ||| |||||||||||||||| || |||||||||||||| ||||| ||||||| Sbjct 8584 ATGCAGTTGTTACTGTACCAGCCTACTTCAATGATGCCCAGCGGCAAGCAACCAAAGATG 8643 Query 349668 CTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 |||||| |||||| || | ||||| | || || || ||||| || Sbjct 8644 CTGGCACCATTGCTGGACTGAATGTCATGAGGATCATCAATGAGCC 8689 Score = 95.1 bits (104), Expect = 4e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 350177 ATTGATGAAGTAGTTTTAGTTGGTGGTTCTACACGTATTCCAAAAGTTCAACAGTTACTA 350236 ||||||||| | ||| | |||||||| ||||| || |||||||| |||| ||| | | Sbjct 9523 ATTGATGAAATTGTTCTTGTTGGTGGATCTACTCGAATTCCAAAGATTCAGCAGCTGGTG 9582 Query 350237 TCTGAGTTTTTTAATGGCAAAGAACCTTCTAGATCAATTAATCCAGATGAAGCTGTTGCA 350296 ||||| || || ||||| || || || | || || || ||||| ||||| ||| Sbjct 9583 AAAGAGTTCTTCAACGGCAAGGAGCCATCCCGTGGTATAAACCCGGATGAGGCTGTAGCA 9642 Query 350297 TATGGTGCTGCTGTTCAGGC 350316 |||||||||||||| ||||| Sbjct 9643 TATGGTGCTGCTGTCCAGGC 9662 Score = 93.3 bits (102), Expect = 1e-13 Identities = 107/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 183250 CAGCTTGAACAGCTGCACCATATGCAACAGCTTCATCTGGGTTAATTGAACGAGATAATT 183309 |||| || ||||| ||||||||||| ||||| ||||| ||||| || ||| ||| | Sbjct 9664 CAGCCTGGACAGCAGCACCATATGCTACAGCCTCATCCGGGTTTATACCACGGGATGGCT 9605 Query 183310 CTTTGCCATTAAAAAATTCTGAAAGCATTTGTTGAATTTTTGGAATTCTAGTTGAACCAC 183369 | ||||| || || || ||| | || || ||||| |||||||||| ||| || |||| Sbjct 9604 CCTTGCCGTTGAAGAACTCTTTCACCAGCTGCTGAATCTTTGGAATTCGAGTAGATCCAC 9545 Query 183370 CGACTAATACTACTTCATCGATAT 183393 | || | || | |||||| |||| Sbjct 9544 CAACAAGAACAATTTCATCAATAT 9521 Score = 84.2 bits (92), Expect = 7e-11 Identities = 124/175 (71%), Gaps = 3/175 (2%) Strand=Plus/Plus Query 349714 CACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACCAAGaaaaaaaTATTCT 349773 ||| || || || ||||||||||| || ||||| ||| || ||| || || || || Sbjct 8778 CACAGCAGCTGCTATTGCATATGGCCTGGATAA---GAGGGAGGGAGAGAAGAACATCCT 8834 Query 349774 TATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAAT 349833 | | ||||| | ||||| || || || ||||| || || || || |||| | || | Sbjct 8835 TGTGTTTGACCTGGGTGGCGGAACCTTCGATGTGTCTCTTCTGACCATTGACAATGGTGT 8894 Query 349834 TTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGAT 349888 || ||||| || ||| ||| || || ||||||||||| ||||| |||||| Sbjct 8895 CTTCGAAGTGGTGGCCACTAATGGAGACACTCATCTTGGTGGGGAAGACTTTGAT 8949 >seq1905 Length=2355956 Score = 93.3 bits (102), Expect = 1e-13 Identities = 82/101 (81%), Gaps = 1/101 (1%) Strand=Plus/Minus Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 || || || |||||||| || || |||||||||||||| || | ||||||| |||||||| Sbjct 1405099 AAAGTACGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTTTGCTGA-CAGGAGGA 1405041 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAAT 140671 |||||||| ||||| || || || || || ||||| || || Sbjct 1405040 ATTCCTTCCTTATCATGGATCTTGGCCTTGACATTTTCTAT 1405000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510785213022206