Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1093 86.0 7e-12 >seq1093 Length=1386444 Score = 86.0 bits (94), Expect = 7e-12 Identities = 86/109 (79%), Gaps = 2/109 (2%) Strand=Plus/Minus Query 60004 TGGAAGGAATCTTCTTCTCTGGCTCGTTCTGTG-CTATTTTCTGGCTCAAAAAGCGTGGC 60062 ||||||| ||||||||||||||||| || || | | || ||||||||||| || || || Sbjct 281608 TGGAAGGGATCTTCTTCTCTGGCTCTTT-TGCGTCAATATTCTGGCTCAAGAAACGGGGA 281550 Query 60063 CTCATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 || ||||| ||||| | || ||||||||||| ||| | | || |||| Sbjct 281549 CTGATGCCTGGCCTTACATTTTCCAACGAGCTTATTAGCAGAGATGAGG 281501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546946406174880