Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq76 104 3e-17 seq3913 86.0 7e-12 seq1093 86.0 7e-12 >seq76 Length=1782596 Score = 104 bits (114), Expect = 3e-17 Identities = 98/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | ||| || ||||| |||||||| ||||| ||||||||||| Sbjct 1433637 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 1433696 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| || | ||| | |||||| |||||| ||||||||||||||||||||| Sbjct 1433697 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTGCCCACAAAATTCTGAGCCAAATTCACA 1433756 Query 152149 ATCGT 152153 || || Sbjct 1433757 ATAGT 1433761 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 |||||||| ||||||| |||||||||||| ||||||||| ||| || || || || || Sbjct 1433637 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 1433696 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| | | ||| | |||||| ||||||||| || |||||||| || ||| Sbjct 1433697 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTGCCCACAAAATTCTGAGCCAAATTCACA 1433756 Query 117425 ATCGT 117429 || || Sbjct 1433757 ATAGT 1433761 >seq3913 Length=711185 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 || |||||||| || | || |||| |||||||||||| ||||| || |||||||| Sbjct 362123 GTAAAGATGTACCGAGGACTAGCCGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 362182 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||| | | |||||| | || || |||||| ||||||||||||||||| | | Sbjct 362183 CCAATGGGTTGCAAGAGGTTCAAATTATTACTGCCCACAAAATTCTGAGCCAAATTGATA 362242 Query 152149 ATCGT 152153 || || Sbjct 362243 ATGGT 362247 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 117304 AGTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTG 117363 ||| || ||||| |||| || || | ||||||||||||| || | ||||| || || Sbjct 362122 AGTAAAGATGTACCGAGGACTAGCCGAATCCTTGCCACCATGCAGCCTGGTACCAAACTG 362181 Query 117364 TCCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGAC 117423 ||| | || | ||||||||||| || || ||||||||| || |||||||| |||| Sbjct 362182 ACCAATGGGTTGCAAGAGGTTCAAATTATTACTGCCCACAAAATTCTGAGCCAAATTGAT 362241 Query 117424 AATCGT 117429 ||| || Sbjct 362242 AATGGT 362247 >seq1093 Length=1386444 Score = 86.0 bits (94), Expect = 7e-12 Identities = 99/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Plus Query 74772 TCATCTCTGCTTATCAATTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTC 74831 ||||||||||| || | || || ||||| | |||||||||||| ||||| || ||||| Sbjct 281503 TCATCTCTGCTAATAAGCTCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCCGTTTCTTG 281562 Query 74832 AACCAAAAGA-TGGCACAGAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGC 74890 | ||| || | || | || || || ||| ||||||||| ||||| | | |||||||| Sbjct 281563 AGCCAGAATATTGACGCA-AAAGAGCCAGAGAAGAAGATCCCTTCCAAAGCAGCAAAGGC 281621 Query 74891 GACAAGGCGTT 74901 |||| |||| Sbjct 281622 CACAACTCGTT 281632 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545641372279600