Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq26544 86.0 7e-12 >seq26544 Length=151321 Score = 86.0 bits (94), Expect = 7e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| | ||||||||||| |||| || || ||||| || |||||| |||| | Sbjct 103560 ATGCAGGTTTTTGTCAAGACCCTTAGGGGGAAAACTATCACACTTGAGATTGAACCCTCA 103619 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | |||| | | ||| || |||||||| || || ||||||||||| | || Sbjct 103620 GACACTATAGAAAATATAAGGGCCAAGATTCAGGATAAAGAAGGAATTCCTCCTAATCAT 103679 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 ||| | || || || ||||||| ||| | || |||| Sbjct 103680 CAGAGGCTGATCTTCCCTGGTAAACAAGTAGAAGATG 103716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568669317566240