Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq1997 149 8e-31 >seq1997 Length=3328139 Score = 149 bits (164), Expect = 8e-31 Identities = 522/807 (65%), Gaps = 21/807 (3%) Strand=Plus/Minus Query 13670 GCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729 |||||| || || |||| || ||||||||||| ||||| || ||| | || ||||| Sbjct 1509510 GCCCCTTAGTAAAGAGGAGGCAGACTTTCCCATCGCATACTCCATAGTGGTTCATCACAA 1509451 Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789 ||| || ||| | ||| | ||||||||||||||||| || ||||| |||| ||| | Sbjct 1509450 GATTGAAATGCTTGAGAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCAT 1509391 Query 13790 CCACGTGGACTCCAAGTCCGGCGACGAGTTCAT--CCGGGGCGTCTCGGCCATCGCCAGG 13847 ||||||||| || | | || ||| | ||| || | || ||| || Sbjct 1509390 TCACGTGGACAAAAAAGCAGAGGAGCCCTTCTTAGCCGCGGTGAT--GGGCATTGCGTCC 1509333 Query 13848 TGCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGT 13907 ||||| || || ||||| || |||| | ||| || || | ||||||||| Sbjct 1509332 TGCTTGAAGAATGTCTTTGTGGCCAGCCAGCTGGAGAGCGTTGTTTATGCATCCTGGAGT 1509273 Query 13908 CGCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGG 13967 || || ||||| ||||||| ||||||| ||||||| | ||| || |||| | Sbjct 1509272 CGGGTTCAGGCTGACCTCAACTGCATGAGGGACCTGTATGCCATGAGTACAAACTGGAAG 1509213 Query 13968 TACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGG 14027 ||| || ||||||| || || ||||||||||| | || ||||||||||| || || || Sbjct 1509212 TACTTGATCAACCTCTGTGGTATGGACTTCCCTATTAAAACCAACCTGGAAATGGTCAGG 1509153 Query 14028 GCGCTGAAGGC---CCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGC--CCAACC 14082 || ||| | |||||||| | ||| |||||| | |||| |||| |||| Sbjct 1509152 AAACTCAAGTCATTCCTGGGCG---AAAACAACCTGGAAACCGAGAAGATGCCTCCAA-- 1509098 Query 14083 ACAAGCTGCACCGCATCAGGAAGAGGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACA 14142 ||||| | | | | |||| | ||| || | || ||| | || |||| Sbjct 1509097 ACAAGGAGGAAAGGTGGAAGAAGCGACACACCGTTG---TCGACGGGAAGCTGACGAACA 1509041 Query 14143 CCGGCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACT 14202 | || | ||| |||| |||||| |||| | || | || | || | ||| |||| Sbjct 1509040 CTGGGGTGGCCAAAGCCCAGCCGCCCCTCACAACTCCTCTTTTCTCAGGCAGCGCCTACT 1508981 Query 14203 TTGCGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCA 14262 ||| ||||| |||| | || | || || || | | | | | | ||| Sbjct 1508980 TTGTGGTCAGTAGGGAATATGTAGGCTATGTGCTAGAAAATGGGGACATCCAAAAGTTCA 1508921 Query 14263 TGCACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAA 14322 || | ||| |||||||||| ||||| || ||| |||| ||||||||| | || || | Sbjct 1508920 TGGAGTGGGCACAGGACACGTATAGCCCAGATGAGTACCTCTGGGCCACCATCCAAAGGA 1508861 Query 14323 TGTACGGGACGCCCGGGGGGATCCCCGTTCACGTC--AAGTACGACACCTCGGACATGTG 14380 | | || | || || || || || | | ||||| ||| || |||||| Sbjct 1508860 --TCCCTGAAGTCCCTGGTTCTCTCCCCTCGAGCCATAAGTATGACTTGTCCGACATGAA 1508803 Query 14381 GGCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCT 14440 || | ||||| ||||||||||| |||| || || ||| | ||||| || | Sbjct 1508802 TGCTGTCGCTAGGTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTTTCCAAAGGCGCTCC 1508743 Query 14441 GTACCCGCCTTGCGACGGCATCCACGT 14467 ||||| || ||| ||| |||| || Sbjct 1508742 TTACCCACCGTGCAGCGGAGTCCATGT 1508716 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656843661483520