Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq154774 96.9 3e-15 seq194801 89.7 5e-13 seq44238 84.2 2e-11 seq23 82.4 7e-11 >seq154774 Length=257 Score = 96.9 bits (106), Expect = 3e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| || |||||||| || || || ||||| ||||||| |||||||| || |||||| Sbjct 175 GATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTAGCGAAT 234 Query 34625 GGGGAGCTGTCCTGCCAGCTCTA 34647 ||||||||||| ||||||||||| Sbjct 235 GGGGAGCTGTCTTGCCAGCTCTA 257 Score = 96.9 bits (106), Expect = 3e-15 Identities = 71/83 (86%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 6698 TAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGG 6757 ||||||||||| ||||||||||||||||| || |||||||| ||||||| ||||| || Sbjct 257 TAGAGCTGGCAAGACAGCTCCCCATTCGCTACATAGAATTGACAGAGGGCATGGCAAGGA 198 Query 6758 GGGAGCGCCATCAGAGGGAGATC 6780 || || |||||||| || ||||| Sbjct 197 GGCAGTGCCATCAGGGGAAGATC 175 >seq194801 Length=427 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 6782 TTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAGGGTTCCGCTTCAAGGTGTCG 6841 || |||||||| |||||||| | ||| ||||||||||||||| | || | |||||| Sbjct 302 TTTGGGTTCCAGGCGCACATGATGATTCTTCTGTCATCAGGGCTGGTTTTGATGGTGTCA 361 Query 6842 ATCACGTACTGCAGCTGGTCCGCTCCCTGTCCCGAATAGTCCGC 6885 ||||| | ||||||||||| |||| || |||||||| || || Sbjct 362 ATCACTTTTTGCAGCTGGTCTACTCCTTGACCCGAATAATCTGC 405 Score = 89.7 bits (98), Expect = 5e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 34460 GCGGACTATTCGGGACAGGGAGCGGACCAGCTGCAGTACGTGATCGACACCTTGAAGCGG 34519 || || |||||||| || |||| ||||||||||| | ||||| |||||| | || Sbjct 405 GCAGATTATTCGGGTCAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACCATCAAAACC 346 Query 34520 AACCCTGATGACAGAAGGATCGTGATGTGCGCGTGGAACCCGAA 34563 | ||||||||||||||| ||| | |||||||| |||||||| || Sbjct 345 AGCCCTGATGACAGAAGAATCATCATGTGCGCCTGGAACCCAAA 302 >seq44238 Length=234 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || | ||||| || || ||| || |||| |||||||| || | ||||| | Sbjct 99 CCACAAATGCTAAGGAACTGTCCTCCAAAGGAGTGAGAATCTGGGATGCCAATGGGTCCC 158 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 |||| |||||||||| | ||| ||| | | || |||| || ||| ||||||| || | Sbjct 159 GAGATTTTCTGGACAGCCTGGGATTCTCTGCACGACAGGAAGGGGACCTGGGCCCAGTTT 218 Query 34413 ACGGGTTCCAGTGGAG 34428 | || ||||||||||| Sbjct 219 ATGGTTTCCAGTGGAG 234 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 6917 CTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCCCGAGATGGGAACCCCCGC 6976 ||||||||||| || || || ||||||| ||| || |||| || | | ||| ||| | Sbjct 234 CTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGTCGTGCAGAGAATCCCAGG 175 Query 6977 TTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTCACCCCCCGGGACGAGAGC 7036 |||||||||| ||||| ||||| | || |||||||| |||| || ||| || || Sbjct 174 CTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTCACTCCTTTGGAGGACAGT 115 Query 7037 TCCTTGGTGTTCGTGG 7052 ||||| | || |||| Sbjct 114 TCCTTAGCATTTGTGG 99 >seq23 Length=1813807 Score = 82.4 bits (90), Expect = 7e-11 Identities = 121/170 (71%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 6702 GCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGGCAGAGGGTGTGGCACGGGGGGA 6761 ||||||||||| ||||| ||| | || ||||| || |||||| ||||| || || | Sbjct 395104 GCTGGCAGGACGGCTCCTGGTTCACCACATAGAACTGTCAGAGGACATGGCAAGGAGGCA 395163 Query 6762 GCGCCATCAGAGGGAGATCCTTCGGGTTCCACGCGCACATCACGATCCTTCTGTCATCAG 6821 || |||| ||||| | || || || ||| || ||||| | ||| | ||||||| ||| Sbjct 395164 GCCCCATTAGAGGAAAGTCTTTTGGATTCAGGGCACACATGATGATTCATCTGTCACCAG 395223 Query 6822 GGTTCCGCTTCAA-GGTGTCGATCACGTACTGCAGCTGGTCCGCTCCCTG 6870 | | || || |||||| |||| | || ||| ||||| |||| || Sbjct 395224 GACTGATTTTTAATGGTGTCAGTCACTTTCTACAGTTGGTCTACTCCTTG 395273 Score = 82.4 bits (90), Expect = 7e-11 Identities = 121/170 (71%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 34475 CAGGGAGCGGACCAGCTGCAGTACGTGATCGACACC-TTGAAGCGGAACCCTGATGACAG 34533 || |||| ||||| ||| || | |||| |||||| || || | |||| |||||| Sbjct 395273 CAAGGAGTAGACCAACTGTAGAAAGTGACTGACACCATTAAAAATCAGTCCTGGTGACAG 395214 Query 34534 AAGGATCGTGATGTGCGCGTGGAACCCGAAGGATCTCCCTCTGATGGCGCTCCCCCCGTG 34593 | | ||| | ||||| || ||| || || || | ||||| |||| ||| || || || Sbjct 395213 ATGAATCATCATGTGTGCCCTGAATCCAAAAGACTTTCCTCTAATGGGGCTGCCTCCTTG 395154 Query 34594 CCACACCCTCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGC 34643 ||| |||||| || ||||| || | ||| ||||| ||||||||||| Sbjct 395153 CCATGTCCTCTGACAGTTCTATGTGGTGAACCAGGAGCCGTCCTGCCAGC 395104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 446972513737440