Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq76 183 3e-41 seq3969 122 7e-23 >seq76 Length=1782596 Score = 183 bits (202), Expect = 3e-41 Identities = 182/236 (77%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 1290 ATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATGGCCACTTTTAGTAAT 1349 ||||| |||||||| ||| ||||| ||||||||||||||||| ||||| || || Sbjct 1691436 ATTGTGACATGGCAGAAAAAGAAAGCTGTAAGCCCAGAAAACATGGTCACTTACAGCAAA 1691495 Query 1350 GACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAACATAACTGAGCTTGGA 1409 | ||| || ||||| || ||||| ||||| | ||| | | ||||| |||||||| ||| Sbjct 1691496 GCCCATGGAGTTGTAGTCCAGCCTGCATATAGAGACAGGGTAAACATCACTGAGCTGGGA 1691555 Query 1410 CTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGATGAAGGGTGCTACAAG 1469 || ||||||| || ||||||||||||||||| |||| ||||| || ||||||| | Sbjct 1691556 CTCTGGAACACAAGCATCACCTTCTGGAACACAACCCTGGACGATGAGGGCTGCTACATG 1691615 Query 1470 TGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGGTGTCTAACCCT 1525 ||| | || || ||||||| ||||||||||| ||||| | || || || ||||| Sbjct 1691616 TGTCTCTTCAATACTTTTGTTTCTGGGAAGATCTCAGGGACAGCCTGCCTCACCCT 1691671 >seq3969 Length=934636 Score = 122 bits (134), Expect = 7e-23 Identities = 111/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || || |||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 799030 GTGGTGGAGGAACTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 798971 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| || | || | |||| || |||||| Sbjct 798970 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACAGGGAGATGTCACCCCTGGTGGACAAC 798911 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 798910 ATCGCCCTGTGGATGACTGA 798891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 413313949329928