Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq465 118 2e-21 seq9896 104 5e-17 seq2179 95.1 3e-14 seq453 95.1 3e-14 seq1905 84.2 5e-11 >seq465 Length=581878 Score = 118 bits (130), Expect = 2e-21 Identities = 138/184 (75%), Gaps = 3/184 (2%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||||||||| |||| ||| ||||| | || || | |||||| Sbjct 115006 AGGACCAGGTGCAGGGTGGACTCTTTCTGGACGTTGTAATCAGAGAGAGTGCAGCCATCT 114947 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACT--CCTTCCTTGT 211020 ||||||||||||||||| ||||| || || || ||| || |||| | ||| || | Sbjct 114946 TCCAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGG-GAGCCGGAAATGCCCTCTTTTAT 114888 Query 211021 CCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCG 211080 |||||||||| || || || |||||||||||| | || | ||| || ||||| | Sbjct 114887 CCTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCATCTCCAGGGTGATGG 114828 Query 211081 TCTT 211084 |||| Sbjct 114827 TCTT 114824 >seq9896 Length=44520 Score = 104 bits (114), Expect = 5e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGC 210968 ||||| | |||||||||||| |||||||| || || | |||||| ||||| |||||| Sbjct 13969 AGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCGGACGGGGTCCCGCCATCCTCCAGC 14028 Query 210969 TGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATC 211028 | |||||| || || || || | || |||||||| || | ||||||||||| |||||| Sbjct 14029 TACTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGGATGCCTTCCTTGTCTTGGATC 14088 Query 211029 TT 211030 || Sbjct 14089 TT 14090 >seq2179 Length=1209437 Score = 95.1 bits (104), Expect = 3e-14 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC 210954 |||||| | ||| |||||| || ||||||||||| ||||| || || ||| | Sbjct 665125 GAAGTCCCAACACAGGGTGAAAGGTAGACTCTTTTTGAATGTTGTAGTCA--AAGTATGG 665182 Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014 |||||||||||||||| || || || | || | | | ||| ||| | ||| | Sbjct 665183 --CCATCTTCCAGCTGCTAACCAGCCAAAAGCAGCCTTAGCCAATCAAGAGAATTTCCCT 665240 Query 211015 CCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAG 211074 | || |||||||| | ||| || ||||| || | || ||| |||| |||| || | Sbjct 665241 CTTTAACCTGGATCGTGGTTTTTACATTTTCTATAGCATCTGAGGATTCAGCCTCAAGGG 665300 Query 211075 TGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| ||||| ||| | || ||||||||||| | ||| || Sbjct 665301 TGATGGTCTTCCCCATAAGGGTCTTTACAAAAATCTGTAT 665340 Score = 84.2 bits (92), Expect = 5e-11 Identities = 153/223 (69%), Gaps = 11/223 (5%) Strand=Plus/Minus Query 210895 GAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCC 210954 |||||| | ||| | ||||| || ||||| ||||| ||||| || || ||| | Sbjct 81340 GAAGTCCCAACACAGGATGAAGGGTAGACTCCTTTTGAATGTTGTAGTCA--AAGTATGG 81283 Query 210955 TTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTT 211014 |||||||||||||||| || || | || || | | | |||||||||| ||| | Sbjct 81282 ---CATCTTCCAGCTGCTTACCAGCAAGGAGCAGCCTTAGCCAATCAGGAGGAATTCCCT 81226 Query 211015 CCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAG 211074 ||| ||||||| ||| ||||| || | || ||| ||||||||| || | Sbjct 81225 CCTAAACCTGGAT------TTTACATTTTTCTATAGCATCTGAGGGTTCAACCTCAAGGG 81172 Query 211075 TGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||| ||||| ||| | || ||||||| || | ||| || || Sbjct 81171 TGATGGTCTTCCCCATAAGGGTCTTTATGAAAATCTGTATGTT 81129 >seq453 Length=5298124 Score = 95.1 bits (104), Expect = 3e-14 Identities = 144/204 (71%), Gaps = 1/204 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| |||| || ||||||||||| |||||||| || | ||| || |||||| Sbjct 4821612 AGGACCAGGTACAGGGTGGACTCTTTCTGGATGTTGTATTTAAAAAGAGTGTGGCCATCT 4821671 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACT-CCTTCCTTGTC 211021 ||||||||| || | | ||||| || | || |||| || ||| | || || ||||| Sbjct 4821672 TCCAGCTGCCTGTCCTCCAAGATGAGTTGCTGCTGGTGTGGGGGAGGTGCCCTCTTTGTC 4821731 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||||||| || || || |||||||||||| | || |||| || ||||| || Sbjct 4821732 CTGGATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTTCAGGGTGATGGT 4821791 Query 211082 CTTTCCCGTGAGAGTCTTTACAAA 211105 | | | | || ||||| || || Sbjct 4821792 CCTGCTGCTCAGGGTCTTCACGAA 4821815 >seq1905 Length=2355956 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/98 (80%), Gaps = 1/98 (1%) Strand=Plus/Minus Query 210957 CCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCC 211016 ||||||||||||||||| || || ||||| || | ||| | | ||||||||| ||||||| Sbjct 1405090 CCATCTTCCAGCTGCTTTCCAGCAAAGATCAGCCTTTGCT-GACAGGAGGAATTCCTTCC 1405032 Query 211017 TTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTC 211054 || || |||||||| || || ||||| || ||||| Sbjct 1405031 TTATCATGGATCTTGGCCTTGACATTTTCTATAGTGTC 1404994 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1155733123919730