Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq465 102 2e-16 seq2268 87.8 4e-12 seq9896 86.0 1e-11 seq16835 84.2 5e-11 >seq465 Length=581878 Score = 102 bits (112), Expect = 2e-16 Identities = 138/191 (72%), Gaps = 1/191 (1%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| ||||| || ||||| ||||| ||||| |||||||| | | ||| | |||||| Sbjct 115006 AGGACCAGGTGCAGGGTGGACTCTTTCTGGACGTTGTAATCAGAGAGAGTGCAGCCATCT 114947 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTG-TC 225620 || |||||||| || || ||||| ||||| || ||| | | ||| || || || || Sbjct 114946 TCCAGCTGCTTGCCTGCAAAGATGAGTCGCTGCTGGGAGCCGGAAATGCCCTCTTTTATC 114887 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 |||||||| ||| ||| ||||||||||| || |||| || | ||||| || Sbjct 114886 CTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCATCTCCAGGGTGATGGT 114827 Query 225681 CTTGCCCGTCA 225691 ||| || ||| Sbjct 114826 CTTCACCTTCA 114816 >seq2268 Length=785913 Score = 87.8 bits (96), Expect = 4e-12 Identities = 127/179 (71%), Gaps = 3/179 (2%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| | ||||| || ||| | || || || | ||||| || || ||||| | || ||| Sbjct 180309 CAAATCTACAATGTGATTGTAACAGCCCACACATTTGTCATAATCTTCTTCATGGTAATG 180250 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || | || || || || || || || ||||||||||| ||||| ||||| || |||||| Sbjct 180249 CCAATAATAATTGGTGGGTTTGGGAACTGATTCGTTCCATTAATAATTGGGGCCCCTGAT 180190 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTATTTCT 7730 || || || ||| | | || || | ||| || || |||| ||||| | |||||| Sbjct 180189 ATAGCATTACCACGAATAAATAACACAAGCTTCTG---ACTATGACCTTCATCATTTCT 180134 >seq9896 Length=44520 Score = 86.0 bits (94), Expect = 1e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGC 225567 ||||| | |||||| ||||| |||| ||||| |||| | || | ||||| || ||| Sbjct 13969 AGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCGGACGGGGTCCCGCCATCCTCCAGC 14028 Query 225568 TGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATC 225627 | ||| || || || || || | || ||||| || || || |||||||||||||||||| Sbjct 14029 TACTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGGATGCCTTCCTTGTCTTGGATC 14088 Query 225628 TT 225629 || Sbjct 14089 TT 14090 >seq16835 Length=2987 Score = 84.2 bits (92), Expect = 5e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 |||| | || ||||| ||| | || || || || || || || || ||||| | ||||| Sbjct 1046 CCAAATCTATAACGTGATTGTCACAGCCCACGCATTCGTAATAATCTTCTTCATAGTTAT 987 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 ||| | || || ||||| ||||| || ||| | || || | || || || || || || Sbjct 986 GCCTATAATAATTGGCGGCTTCGGCAACTGACTTGTACCACTTATAATCGGAGCACCAGA 927 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTT 7724 ||| || || || | | | |||||||||||| ||| | ||||| || || || Sbjct 926 TATAGCATTCCCCCGAATAACCAATATAAGTTTCTGACTTCTACCCCCATCATT 873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1189013873200188