Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq2307 111 1e-19 >seq2307 Length=4779897 Score = 111 bits (122), Expect = 1e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 4570 CTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTT 4629 |||| || ||||| || ||||| || || || || | ||||||||| | |||||||| | Sbjct 580535 CTTCATCCCTGCTGATGAGTTCATTCGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 580476 Query 4630 TAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACG 4689 | ||||| || ||||| |||||||||||||| ||||| | |||||| ||||| ||||| | Sbjct 580475 TCAGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGG 580416 Query 4690 CTAC 4693 | || Sbjct 580415 CCAC 580412 Score = 89.7 bits (98), Expect = 4e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 4260 TGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCC 4319 ||||| || || |||||||| || |||||||| ||||| ||||| ||||| || |||||| Sbjct 587697 TGGTACTCAGAAACTCGCTTCTCAAAGAAATTCGTTTTCCCTTCCAACGAGATGTTTTCC 587638 Query 4320 ATAAAATCAAACGGATT 4336 ||||||||||| ||||| Sbjct 587637 ATAAAATCAAAGGGATT 587621 Score = 84.2 bits (92), Expect = 2e-11 Identities = 97/130 (75%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 4921 AAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAA 4980 |||||||| || |||||||| || || || || ||||||||||||||||| || || | Sbjct 571138 AAAATCTT---ACCAAGTTTTCATTGACAATTCCATCACTGGCTGCAAAAAAGGCTAAGA 571082 Query 4981 CATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 || || ||||| |||| || || | |||||| || |||||||| || | || || | Sbjct 571081 TGTGGGAGATAAAATACTTCTCATCCGACTTAAGCTTGTTCCAGTGAGGGAGGTCCTTTG 571022 Query 5041 TTAAATCAAC 5050 || ||||| Sbjct 571021 ACAAGTCAAC 571012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425851475247266