Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6322 152 7e-32 seq12441 109 8e-19 seq116398 100 4e-16 >seq6322 Length=173588 Score = 152 bits (168), Expect = 7e-32 Identities = 157/205 (77%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||| |||||||| || || ||||| ||||| |||| |||||||| ||||||| || Sbjct 119790 TCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAGAATATTGATGCA 119731 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 ||||| ||||| ||||| || |||||||| || ||||| | || || ||||| || Sbjct 119730 AAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCACAACTCGTTCTCCATAG 119671 Query 48303 CTGGCTTCGTTGTGT----ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGG 48358 | || || |||| | ||||| | | ||||| ||||||||||| || |||||||| Sbjct 119670 GTAGCCTCTTTGTCTCCAAATCCAACACAGGGCCCAGTCAGCCTTCTTTTTCACACAAGG 119611 Query 48359 CATTGTTTCTATAGCATTAAAGAGA 48383 |||||| || |||||||| |||||| Sbjct 119610 CATTGTCTCAATAGCATTGAAGAGA 119586 >seq12441 Length=306159 Score = 109 bits (120), Expect = 8e-19 Identities = 104/133 (78%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 77127 TGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 77186 ||||||||||| ||||| || || || ||||| || |||||||| || || || | || Sbjct 76078 TGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATGGAC 76137 Query 77187 TCATTGTTTCCCAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTA 77246 ||||| || |||| ||| |||||||| |||||||| ||||| || || | | |||||| Sbjct 76138 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 76197 Query 77247 TTTCTGAGACCAT 77259 ||||| | ||||| Sbjct 76198 TTTCTTATACCAT 76210 Score = 102 bits (112), Expect = 1e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 || || || || || | || ||||| ||||| |||||||| || |||||||| || ||| Sbjct 90263 GTCCCAGCGTTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTTG 90322 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 || |||||||| || | || || || || ||||| || || | ||| | ||||||| Sbjct 90323 TAGGTTTCAATTGCAGCGTCGATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 90382 Query 78519 ATATGCTGAGGTCTTTCAACC 78539 |||||||| ||||||||| || Sbjct 90383 ATATGCTGTGGTCTTTCAGCC 90403 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 76849 TCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATATGAATAT 76908 |||| |||||||| ||||| || || |||||| ||| | || || || || || || | Sbjct 72781 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 72840 Query 76909 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 76968 | | || || ||||||||||||||||| ||||| || || ||||| || | || |||| Sbjct 72841 TTAAAGATTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCGGCCATCTTGAGAACAGTCT 72900 Query 76969 TTTGAGGAATTTCCCA 76984 | |||| || ||||| Sbjct 72901 TCTGAGAGATCTCCCA 72916 >seq116398 Length=207 Score = 100 bits (110), Expect = 4e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 48132 AACATTAAACATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAA 48191 ||||| | ||| ||||||||||| || | ||| |||||||| ||||| | || || ||| Sbjct 120 AACATCAGACAGGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAA 61 Query 48192 AATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCA 48251 || || || || ||||| ||| ||||| |||||||| ||||||| ||| ||||| ||| Sbjct 60 AACGTAAGGCCAGGCATCAGTTTCCGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692669873161280