Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq6322 149 9e-31 seq12441 114 2e-20 seq116398 91.5 2e-13 seq2307 89.7 7e-13 >seq6322 Length=173588 Score = 149 bits (164), Expect = 9e-31 Identities = 156/205 (76%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731 ||||| |||||||| || |||||||| ||||| | || |||||||| ||||| | || Sbjct 119790 TCGTTGGAAAATGTAAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAGAATATTGATGCA 119731 Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA 46791 ||||| ||||| ||||| || ||||||||||| || || | |||| || ||||| || Sbjct 119730 AAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCACAACTCGTTCTCCATAG 119671 Query 46792 CTGGCATCATTAT----GAATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGG 46847 | || || || | |||||| | | ||||| |||||||| || || |||||||| Sbjct 119670 GTAGCCTCTTTGTCTCCAAATCCAACACAGGGCCCAGTCAGCCTTCTTTTTCACACAAGG 119611 Query 46848 CATTGTTTCTATAGCATTAAAGAGA 46872 |||||| || |||||||| |||||| Sbjct 119610 CATTGTCTCAATAGCATTGAAGAGA 119586 >seq12441 Length=306159 Score = 114 bits (126), Expect = 2e-20 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 75722 TGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 75781 ||||||||||| ||||| || || || ||||| || |||||||| || || || | || Sbjct 76078 TGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATGGAC 76137 Query 75782 TCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACTA 75841 ||||| || |||| ||| ||||||||||||||||| ||||| || || | | |||||| Sbjct 76138 TCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 76197 Query 75842 TTTCTGAGACCAT 75854 ||||| | ||||| Sbjct 76198 TTTCTTATACCAT 76210 Score = 104 bits (114), Expect = 3e-17 Identities = 105/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 || || || || || | |||||||| |||||||| ||||| || |||||||| || ||| Sbjct 90263 GTCCCAGCGTTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTTG 90322 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 || |||||||| | || || ||||| || ||||| || |||| || | ||||||| Sbjct 90323 TAGGTTTCAATTGCAGCGTCGATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 90382 Query 77114 ATATGCTGAGGTCGTTC 77130 |||||||| |||| ||| Sbjct 90383 ATATGCTGTGGTCTTTC 90399 Score = 102 bits (112), Expect = 1e-16 Identities = 122/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Plus Query 77339 CTAAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATT 77398 || || | ||| |||||||| ||||| | || || || || || || || |||| || Sbjct 96478 CTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGATG 96537 Query 77399 GCATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAAT 77458 ||||||||||| || | |||||| |||| || ||| | || || || | |||||| | | Sbjct 96538 GCATAGTCAGGGTGCTTTGTAGTCAAGGTTGCAGCTGTCTCAGCAGCCAGAGTATCCAGT 96597 Query 77459 TCTATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 77504 || | || || |||||| | || || ||||| || |||||||||| Sbjct 96598 TCCACTGTGGTGACTCCGCTGTACAGGCCTTGGATTACTTTCATGG 96643 Score = 93.3 bits (102), Expect = 6e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 75444 TCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATAT 75503 |||| |||||||| ||||| || || |||||| ||| | || || || || || || | Sbjct 72781 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 72840 Query 75504 TCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCT 75563 | | || || ||||||||||||||||| ||||| || || ||||| || | || |||| Sbjct 72841 TTAAAGATTGGCTTTGATCGATGAAAGCGCCTCTCTCGGCGGCCATCTTGAGAACAGTCT 72900 Query 75564 TTTGAGGAATTTCCCA 75579 | |||| || ||||| Sbjct 72901 TCTGAGAGATCTCCCA 72916 Score = 91.5 bits (100), Expect = 2e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 76510 ATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACA 76569 ||||||| ||||| || ||||||||||| ||||||| ||||||||| ||||| ||||| Sbjct 82935 ATATAACTTCTCAAACTCCTCTCCCCAAACCTCATCCAGACCAGGACACTCATTTGGACA 82994 Query 76570 CATCAATGACCACTC 76584 |||||||||||| || Sbjct 82995 CATCAATGACCAGTC 83009 >seq116398 Length=207 Score = 91.5 bits (100), Expect = 2e-13 Identities = 92/120 (77%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 46621 AACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAA 46680 ||||| | ||| ||||||||||| || | || |||||||| ||||| | || || ||| Sbjct 120 AACATCAGACAGGCAAAATCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCATTGGAA 61 Query 46681 AATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCA 46740 || || || |||||||| ||| || || |||||||| ||||| | ||| ||||| ||| Sbjct 60 AACGTAAGGCCAGGCATCAGTTTCCGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCA 1 >seq2307 Length=4779897 Score = 89.7 bits (98), Expect = 7e-13 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 47127 TACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACG 47186 ||| || || || |||||||| ||||||| ||||| ||||||||| ||||| |||||| | Sbjct 561540 TACCTCCTCTGCGGTCCAGAAAGACGCCTGTGCTTGTTTATACATCTTCCAAATATCAGG 561481 Query 47187 ATATTGGATCGGAAAAATAACAAA 47210 || ||||||||||| || ||||| Sbjct 561480 GTACTGGATCGGAAAGATGACAAA 561457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 710882913440640