Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq9896 100 6e-16 seq468 96.9 7e-15 seq6768 89.7 1e-12 seq2360 89.7 1e-12 seq427 89.7 1e-12 seq6256 86.0 1e-11 seq458 86.0 1e-11 seq2592 84.2 5e-11 seq76 84.2 5e-11 >seq9896 Length=44520 Score = 100 bits (110), Expect = 6e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||||||||| | ||| | ||| || || ||| ||||| |||||||||||||| | Sbjct 13948 CCACCACGCAGACAAAGCATCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCGGAC 14007 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 | || | ||||||||| || | || |||||||| |||| | || |||||| || Sbjct 14008 GGGGTCCCGCCATCCTCCAGCTACTTGCCGGCAAATATCAGCCTCTGATGGTCAGGTGGG 14067 Query 282993 ATACCCTCCTTGTCTTGGATCTT 283015 || || ||||||||||||||||| Sbjct 14068 ATGCCTTCCTTGTCTTGGATCTT 14090 >seq468 Length=686240 Score = 96.9 bits (106), Expect = 7e-15 Identities = 159/227 (70%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 |||||| ||||| | | ||||| | | ||| ||||| |||||||||||||| | Sbjct 637143 CCACCATGCAGGTAAGGCACCAGGGGCCAGGTGGAGTCTTTCTGGATGTTGTAGTCCAAA 637202 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || ||| ||| ||||| | ||||| || ||||| |||| | | |||||| || Sbjct 637203 AGAGTGTGGCGGTCCTCCGGCTGTTTGCCAGCAAATATCAGCCTCTACTGGTCAGATGGG 637262 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTC-CGAAGCTTCGAC 283051 | || | ||||||||| || | || || || | | | ||||||| | |||| | | Sbjct 637263 ACGCCTTTCTTGTCTTGTGTCATGGCCTTGACATTCTGGGTAGTGTCACTGGGCTT-GTC 637321 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098 || |||||||| ||||||||| ||| | ||| || || ||||||| Sbjct 637322 CTCAAGAGTGATGGTCTTACCCATCAGGGGCTTCACAAAGATCTGCA 637368 >seq6768 Length=181965 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 68599 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 68657 >seq2360 Length=223721 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 157379 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 157321 >seq427 Length=2250747 Score = 89.7 bits (98), Expect = 1e-12 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||| Sbjct 748589 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGA 748531 >seq6256 Length=967024 Score = 86.0 bits (94), Expect = 1e-11 Identities = 55/60 (92%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGAT 168812 || |||||||||| |||||||| ||||||||||| |||||||||||||| |||||||||| Sbjct 337042 TTTGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCCGAT 337101 >seq458 Length=2134099 Score = 86.0 bits (94), Expect = 1e-11 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCC 168809 ||||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||| Sbjct 1500556 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTCCCC 1500500 >seq2592 Length=5982234 Score = 84.2 bits (92), Expect = 5e-11 Identities = 54/59 (92%), Gaps = 0/59 (0%) Strand=Plus/Minus Query 168753 TTAGTATAGTGGTTAGTATCCCTGCCTGTCACGCAGGAGACCGGGGTTCAATTCCCCGA 168811 ||||||||||||| |||||||| ||||||||||| ||||||| |||||| ||||||||| Sbjct 4852112 TTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCAGGGTTCGATTCCCCGA 4852054 >seq76 Length=1782596 Score = 84.2 bits (92), Expect = 5e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 273780 GTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAACCAAACTGA 273839 |||||||| || | | || ||| || |||||||| || |||| | ||||||||| Sbjct 1433637 GTGAAAATATAACGAGGGCTTGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 1433696 Query 273840 CCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCATATTCACG 273899 || |||| | ||| |||| |||||||| || || || ||| |||||||| |||||| Sbjct 1433697 CCAATGGGCTGAAGCAAGTTAATGTTGTTACTGCCCACAAAATTCTGAGCCAAATTCACA 1433756 Query 273900 ATAGTC 273905 |||||| Sbjct 1433757 ATAGTC 1433762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1043651881328108