Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_033176.1 Length=224064 Score E Sequences producing significant alignments: (Bits) Value seq5500 147 3e-30 seq9765 134 2e-26 >seq5500 Length=354892 Score = 147 bits (162), Expect = 3e-30 Identities = 204/286 (71%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8300 AACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATC 8359 || ||||| ||||| || || |||||| || |||||||| | || | |||| ||| Sbjct 128530 AAGGGACAGCCCTTCACATTATTACAGATGAGCGACTGAATGGAGGCAGTGTTGATAATC 128471 Query 8360 CCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACG 8419 || ||||| ||||| || || ||||| |||||||||||| ||| || |||||| Sbjct 128470 TTAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTACTGCGGAGAACAGATGGGA 128411 Query 8420 TTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAG 8479 || |||| || ||||| | |||||| || || || | || | ||| |||| || ||| Sbjct 128410 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 128351 Query 8480 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACG 8539 || || | ||||| ||||||||||||| | | | |||||||||| || || | | Sbjct 128350 ATAGCATCTGGACGTGGCTTTTCCACCAGCAGGGCAGGATACAGCTCCATGGCATCAATG 128291 Query 8540 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 || | ||| ||||| | || ||||| || ||||| ||||||| Sbjct 128290 TCACTGTAGAGGGCTTCCAACTCTGCAGCCATTTCCTTCTCTCCTG 128245 Score = 134 bits (148), Expect = 2e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315 |||||||| || | || || ||| || ||||| || ||||| || ||||| ||||| Sbjct 126993 GTCTGGAAGAGCCGTTCATCCTCCCACTCAGGATGCTCCTGTTTAAGCACATCACACACT 126934 Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375 |||||||| |||| |||||||| ||||| |||||||| || ||||| ||||| ||||| Sbjct 126933 CTGTTGTGCTCCCGCAGCCAGATGGTGGCATACATCATCAGACCAGGCACCAGACCAAAG 126874 Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435 |||| || || || || | || | | || || | || || |||||||| | Sbjct 126873 ACCTCCTGGCCCACTGCAAACCGTAGATGCTCAGGGGTGTGAGGGGGGTAGATCATCTCT 126814 Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9479 |||||| ||||||||||| ||| ||||||| || || |||| Sbjct 126813 ACCTGGGTGTCTTTGACCGTGGGAGGATACACCTCGCCACCAAT 126770 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708 |||||||||||| ||||||||| ||||| | || |||||| | ||| ||| | || Sbjct 125485 TCTTACCCCATGGCCCAGTCCTCGGGTGAACCCAGGTCCTCGCTTCTGATCTGTCTTGAA 125426 Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768 |||||| || ||||| || ||| |||| || || ||||| | || | ||| || ||||| Sbjct 125425 AAACTGATGAGTGAAGTGCTGGGCAAAGAATGCGAACATCATATTCGAGCCTTGAGGATC 125366 Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 9807 || |||| | |||| |||||| ||| |||| ||| Sbjct 125365 AGGGATGAACTTTCTCCTTAGAAGAACTTTGTCCAGAAC 125327 >seq9765 Length=354839 Score = 134 bits (148), Expect = 2e-26 Identities = 164/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Plus Query 8362 GAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTT 8421 ||| ||||| || || ||||| |||||||||||||| ||| | || || || ||| || Sbjct 241110 GAAGCCCACATCACCACCGAATGTGCTGGGCTTCCAATACTCTGGAGAACAAATGGGATT 241169 Query 8422 CGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGAT 8481 | | | ||| ||||||||||| || |||||||| | ||| | |||||||| || ||||| Sbjct 241170 CCCTAGGAGACCTTTGAGGGAAAAGGGAGCCCCAATCTCTATCATGCTCTCCCCAAAGAT 241229 Query 8482 GGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTC 8541 || |||||| || |||||||| | || || | ||| | ||| | || |||| ||| Sbjct 241230 GGAGTTGGGCTGGCACTTTTCCAGAAGCAACCCTGGGTAGAACTCTAAGGCATCGATGTC 241289 Query 8542 TCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTTTCTCCTG 8585 ||||| || || | || || || || ||||| ||||||| Sbjct 241290 ACCGTACAGCTCCTCCAACTCAGCTGCCATTTCCTTCTCTCCTG 241333 Score = 96.9 bits (106), Expect = 5e-15 Identities = 176/253 (70%), Gaps = 16/253 (6%) Strand=Plus/Plus Query 9232 TCCCCGATAATGATGAGTCGAGTGGTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGT 9291 || || |||| |||||| |||||||||||||| || ||||| ||| ||| || || Sbjct 248926 TCACCTATAAGGATGAGGCGAGTGGTCTGGAAGAGCTGCTCATCATCCCAGGTCGGGTGC 248985 Query 9292 TCTTGTTTCAGAACATCGCACACCCTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACAT- 9350 || | ||||| | |||||||| | |||||| || | |||||||| |||| |||| Sbjct 248986 TCCTCCTTCAGCAGGTCGCACACGCGGTTGTGCTCACGCAGCCAGATCGTGG---ACATG 249042 Query 9351 --CATGAGCCCAGGTACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATGTTTTCG 9408 ||| ||||| || | || ||||| |||| || || || |||| || || ||| Sbjct 249043 ACCATCAGCCCTGGGAGCAACCCAAACACCTCCTGGCCCACGGCCATCTGC---TTCTCG 249099 Query 9409 GGC---ACTTCGGGAGGATAGATCATGTGCACCTGGACGTC--TTTGACCGAGGGGGGAT 9463 ||| || | || || ||| ||| |||| ||||||| || ||||| || || | Sbjct 249100 GGCGGGACACCCGGTGGGTAGCGCATCAGCAC--GGACGTCTGTTCCACCGATGGTGGGT 249157 Query 9464 ACATTTCACCGTC 9476 ||| || ||||| Sbjct 249158 ACACCTCTCCGTC 249170 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 714813969086080