Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20agrestis_20[genbank_20GCA_5F001305995.1_202015-10-02] 230,202 sequences; 3,124,140,565 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq465 114 3e-20 seq453 95.1 3e-14 seq26544 84.2 5e-11 >seq465 Length=581878 Score = 114 bits (126), Expect = 3e-20 Identities = 139/184 (76%), Gaps = 9/184 (5%) Strand=Plus/Plus Query 177951 AAAACGATCACCCTCGAGGTGGAAAGCTCAG--ACACCATCGAGAACGTCAAACAAAAGA 178008 || || |||||||| ||| |||| || ||| ||||||||||||| ||||| |||| Sbjct 114824 AAGACCATCACCCTGGAGATGGA--GCCCAGTGACACCATCGAGAATGTCAAGGCCAAGA 114881 Query 178009 TTCAGGA-CAAAGAAGGAATCCCTCCGG--ACCAGCAACGACTTATCTTCGCCGGAAAAC 178065 | ||||| ||||| || || ||||| |||||| ||||| ||||| || || || | Sbjct 114882 TCCAGGATAAAAGAGGGCAT--TTCCGGCTCCCAGCAGCGACTCATCTTTGCAGGCAAGC 114939 Query 178066 AGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCATC 178125 |||| |||||||| | ||||| | ||||| |||||||| ||||| || || ||||| | Sbjct 114940 AGCTGGAAGATGGCTGCACTCTCTCTGATTACAACGTCCAGAAAGAGTCCACCCTGCACC 114999 Query 178126 TTGT 178129 | || Sbjct 115000 TGGT 115003 >seq453 Length=5298124 Score = 95.1 bits (104), Expect = 3e-14 Identities = 149/210 (71%), Gaps = 5/210 (2%) Strand=Plus/Minus Query 177923 CCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG- 177981 ||| || |||||||| || || | | | || |||||||| ||||||| || ||| Sbjct 4821822 CCATATCTTCGTGAAGACCCTGAGCAGCAGGACCATCACCCTGAAGGTGGA--GCCCAGT 4821765 Query 177982 -ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATC-CCTCCGGACCA 178039 ||||||||||||| ||||| ||||| ||||||||||| || | | || || |||| Sbjct 4821764 GACACCATCGAGAATGTCAAGACCAAGATCCAGGACAAAGAGGGCACCTCCCCCACACCA 4821705 Query 178040 GCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAA 178099 ||| | ||| ||||| | | | ||||| |||||||| |||||| | || || Sbjct 4821704 GCAGCAACTCATCTTGGAGGACAGGCAGCTGGAAGATGGCCACACTCTTTTTAAATACAA 4821645 Query 178100 CGTCCAAAAAGAATCAACACTGCATCTTGT 178129 | |||| ||||| || || ||| | || || Sbjct 4821644 CATCCAGAAAGAGTCCACCCTGTACCTGGT 4821615 >seq26544 Length=151321 Score = 84.2 bits (92), Expect = 5e-11 Identities = 109/151 (72%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 177928 TTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCA 177987 |||| || || || || | || ||||| ||||| || ||| | ||| ||||||||| | Sbjct 103567 TTTTTGTCAAGACCCTTAGGGGGAAAACTATCACACTTGAGATTGAACCCTCAGACACTA 103626 Query 177988 TCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGAC 178047 | || || | | ||||||||||| ||||||||||| ||||| | || || | | Sbjct 103627 TAGAAAATATAAGGGCCAAGATTCAGGATAAAGAAGGAATTCCTCCTAATCATCAGAGGC 103686 Query 178048 TTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 | |||||| | || ||||| | |||||||| Sbjct 103687 TGATCTTCCCTGGTAAACAAGTAGAAGATGG 103717 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200180839213188