Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq4 269 3e-67 seq26 181 1e-40 seq87 93.3 4e-14 seq42 82.4 8e-11 >seq4 Length=96435083 Score = 269 bits (298), Expect = 3e-67 Identities = 599/888 (67%), Gaps = 12/888 (1%) Strand=Plus/Plus Query 16664 ACACCCATTCTTTGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGA 16723 || ||||| || || || |||| || || || || || ||||| || || || ||||| Sbjct 65463902 ACCCCCATCCTCTGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGT 65463961 Query 16724 GATATATTCTCCATGAAATCAAAAGGATTAGTAGCT--GAAAATATTTTAGAGTACCCCA 16781 || ||||| |||||||| ||||| ||||| || |||||| || || |||| | Sbjct 65463962 GAAATATTTTCCATGAAGTCAAATGGATTTTCTACTTTGAAAATCTTGCTGA--ACCCTA 65464019 Query 16782 GTTCGGCGATTAATCTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCA 16841 | || || | || ||||| || ||||| || || || ||| | ||||||||| Sbjct 65464020 GCTCCAGCATAAGCCTGTCCGCCACGAATTCGATGTACTGCTTCATCAGGGCGCAGTTCA 65464079 Query 16842 TTCCTATAAGACGTACCGGAAGAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTT 16901 | || || || || || || || ||||| | ||| ||||||| || || | Sbjct 65464080 TCCCGATGAGCTTCACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTGCGT 65464139 Query 16902 CCTTAATAATA-CTAGCAACTCGTTCCTCGGACGGTGTATGTTTAAGATGTTTAAACATC 16960 |||| || || | | ||| || ||| | ||| | ||| || || | |||||| Sbjct 65464140 TGATAATGATTTCTTGTA-CTCTTTGCTCCGGCGGCTTGTGTACCAGGTGCCTGAACATC 65464198 Query 16961 AGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTC 17020 || || || || || ||||| ||||| |||||||| ||||| ||||| ||||| || Sbjct 65464199 AGGCAGGCAAAGCAACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTA 65464258 Query 17021 AACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAG 17080 | || |||||| ||| |||||||| | ||| ||||| | | || || ||||| ||| Sbjct 65464259 AGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGACACAAAGGAGCCAGAGAAG 65464318 Query 17081 AATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTA 17140 | || || || || | ||||| || | | |||||| | || || || ||||||| Sbjct 65464319 AGGATCCCTTCCACAGCAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCC 65464378 Query 17141 CG-AATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGC 17199 | |||||| | | |||| ||||| || | || | ||| ||| || || || || Sbjct 65464379 CCCAATCCAACGCAGGGCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGC 65464438 Query 17200 CTTAAATA-AT-TTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAGGCTG 17257 || || | || ||| || | | | | || | || || ||||||||||| || ||| Sbjct 65464439 ATTGAAGAGATATTCCCTCTCTTTGGAA--TCTTTAATGTAAGTATCGATGAGGAGACTG 65464496 Query 17258 TACATTTCGGAGTG-TATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTC 17316 |||||||| || || |||||| |||||||| || || || || || || || ||||| || Sbjct 65464497 TACATTTCAGAATGTTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTC 65464556 Query 17317 CGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCT 17376 | | |||||||| | ||| || ||| | || ||||| || || ||||| || || Sbjct 65464557 TGTAACCTGAACTTCTTGGCTGAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACT 65464616 Query 17377 CGCGGCGAAAAACGCCAATATATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCG 17436 ||| || || || |||| | || || |||| | | ||||| ||| | || | Sbjct 65464617 CGCAGCAAAGAAAGCCAGGACGTGAGATATAAAATGTCTCTCGTCGGGTTTCAGCGCTTC 65464676 Query 17437 CCAGTCCTTTAAATCTTTGGATATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGC 17496 ||||| | | ||| ||||| | || || || || | ||||| || |||| | || Sbjct 65464677 CCAGTGTTGAATATCCTTGGAGAGGTCGACCTCCTCAGCCGTCCAGAAGGAAGCCTCGGC 65464736 Query 17497 CTTTTTATACATATTCCAAATATCATTGTATTGTATGGGGAATACAAC 17544 || || ||||| | ||| ||||||| ||||| ||||| || || || Sbjct 65464737 TTTCTTGTACATCTGCCAGATATCATGGTATTCGATGGGAAAGACCAC 65464784 >seq26 Length=66536344 Score = 181 bits (200), Expect = 1e-40 Identities = 604/927 (65%), Gaps = 22/927 (2%) Strand=Plus/Plus Query 16629 CATCCAATGAAAATGTGTTATCT--TGTTTATGAACAACACC--CATTCTTTGGTAATCG 16684 ||||||| | ||| | || ||| || | |||| | |||| ||| || || || || Sbjct 31519079 CATCCAAGGTAAAAGAATTCTCTGCTGAATTTGAA-ATCACCTCCATCCTCTGATACTCA 31519137 Query 16685 CTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCA 16744 | || || || || | ||||| || || || ||||| || ||||| |||| ||| ||| Sbjct 31519138 CCCACTCGCTTCTCAAGGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCACGAAGTCA 31519197 Query 16745 AAAGGATTAGTAGCT--GAAAATATTTTAGAGTACCCCAGTTCGGCGATTAATCTATCCG 16802 |||||||| || | |||| || || |||| || || || | | || | Sbjct 31519198 AAAGGATTTTCTACTTTGGAAATCTTGCTGA--ACCCTAGCTCCAGCATAAGCGTGTCGG 31519255 Query 16803 CTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAA 16862 | || ||||| || || | ||| | ||||||||| | || || || || | Sbjct 31519256 CCACGAATTCGATGTACCGCTTCATGAGGGTGCAGTTCATCCTGATGAGCTTCACAGGCA 31519315 Query 16863 GAGCTTCCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATA-CTAGCAACT 16921 | || ||||| | ||| |||| ||| || || | |||| || || | | || Sbjct 31519316 GGGCCTCCGTGAGAAACACCTGCTTTATCCTCACTGCGTTGATAATGATTTCTTGTA-CT 31519374 Query 16922 CGTTCCTCGGACGGTGTATGTTTA--AGATGTTTAAACATCAGACATGCGAAATCGCAAT 16979 | || ||| | ||| | | ||| || || | |||||||| || || || | || | Sbjct 31519375 CTTTGCTCTGGCGGCTT--GCTTACCAGGTGCCTGAACATCAGGCAGGCAAAGCCACAGT 31519432 Query 16980 GTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTC 17039 |||| | ||| |||||||| ||||| || || |||||||| | || |||||| ||| Sbjct 31519433 GTAAACGCTCATCTCTGCTAATAAGCTCTTTGGAAAATGTAAGGCCAGGCATCAGTCCCT 31519492 Query 17040 GTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATG 17099 ||||||| | ||| ||||| | || || || ||||| ||||| || | || || | | Sbjct 31519493 GTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATGTCTTCTACAGCAG 31519552 Query 17100 CAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGT-TACGAATCCATTTCTGCACC 17158 |||| || | | || ||| | || || | | ||||| | | |||||| | | || Sbjct 31519553 CAAAGGCCACAACTCTTTCTCCATAGGTAGTCTTTTTGTCTCCAAATCCAACGCAGGGCC 31519612 Query 17159 CACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTT 17218 || || || | | || | ||| ||| || || || || || || | | || | Sbjct 31519613 CAGTCAGCCTACTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCTC 31519672 Query 17219 TCCTGTAGGTCGATTATATAC-GTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTT 17277 || | | || | | || || || ||||| || ||||||||||| || ||| |||| Sbjct 31519673 TCTT-----TGGAATCTTTAATGTGTCAATGAGGAGACTGTACATTTCAGAATGTTTGTT 31519727 Query 17278 CTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTA 17337 |||||||| || || || || || || || ||||| || | | |||||||| | Sbjct 31519728 TTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTGGCT 31519787 Query 17338 GAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATAT 17397 || || ||| | || ||||| || || ||||| || || || || || || |||| | Sbjct 31519788 AAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTGGCTGCAAAGAAAGCCAGGAC 31519847 Query 17398 ATGCTTAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGA 17457 || || |||| | | ||||| ||| | || | | ||| | | ||| ||||| Sbjct 31519848 GTGAGATATAAAATGTCTCTCGTCAGGTTTCAGCGCTTCCTAGTGTTGAATATCCTTGGA 31519907 Query 17458 TATATCCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAAT 17517 | ||||| || || | ||||| || ||| | || || || ||||| | ||| || Sbjct 31519908 GAGGTCCACCTCGTCAGCTGTCCAGAAGAAGGCCTCGGCTTTCTTGTACATCTGCCAGAT 31519967 Query 17518 ATCATTGTATTGTATGGGGAATACAAC 17544 ||||| ||||| ||||| || ||||| Sbjct 31519968 ATCATGGTATTCAATGGGAAAGACAAC 31519994 >seq87 Length=2570995 Score = 93.3 bits (102), Expect = 4e-14 Identities = 324/501 (65%), Gaps = 15/501 (3%) Strand=Plus/Plus Query 17050 CCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGCGAT 17109 ||| ||||| | | || || ||||| ||||| || || || || | ||||| | | Sbjct 1819201 CCAGAATATTGACACAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCAC 1819260 Query 17110 TAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCAC---CCACTCGGC 17166 | |||||| | || || || ||||||| | |||||| | |||| ||| ||||| Sbjct 1819261 AACTCGTTCTCCATAGGTAGCATCTTTGTCCCCAATCCAAT---GCACGGTCCAGTCGGC 1819317 Query 17167 TTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAA----ATAATTTCTCTTTTTCCT 17222 || | || | ||| ||| || || || || || | ||| | |||| ||| Sbjct 1819318 CTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGACAAGATATTCCCTCTCTTTG-- 1819375 Query 17223 GTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCA 17282 | | || | || || || | ||||| || ||||||||||| || |||||||| |||| Sbjct 1819376 GAA--TCTTTAATGTAGGTGACAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCA 1819433 Query 17283 TGGCTATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATC 17342 |||| || || || || || || || | ||| || | | |||||||| | || | Sbjct 1819434 TGGCAATTTGGAAGCCATAGAAACAGCTGGCCTCTGTAACCTGAACTTCTTGGCTAAAGC 1819493 Query 17343 GTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCT 17402 || | |||||||| || || | || || |||| | || || |||| | || Sbjct 1819494 ACTCGACCAGATTTTCATTGACTAATCCATCACTCGTCACAAAGAAAGCCAGGACGTGGG 1819553 Query 17403 TAATGAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATAT 17462 || |||| | | ||||| ||| | || | ||||| | | ||| ||||| | | Sbjct 1819554 ATATAAAATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGT 1819613 Query 17463 CCACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCAT 17522 |||| || || | |||| || ||| | || || || ||| | | ||| ||||||| Sbjct 1819614 CCACCTCCTCAGCCATCCAGAAGGAGGCCTCGGCTTTCTTGTAC-TCTGCCAGATATCAT 1819672 Query 17523 TGTATTGTATGGGGAATACAA 17543 ||| | || || || |||| Sbjct 1819673 GGTACTCGATAGGAAAGACAA 1819693 >seq42 Length=9663327 Score = 82.4 bits (90), Expect = 8e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || ||||||||||| || ||||||||||| || |||||||| |||||||| || || Sbjct 3435399 ATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAATTTGG 3435340 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTC 17331 || || || || || ||||| || | | |||||||| Sbjct 3435339 AAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTC 3435302 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517504616857800