Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_001348.1 Length=124884 Score E Sequences producing significant alignments: (Bits) Value seq26 311 7e-80 seq8 111 1e-19 seq13 84.2 2e-11 seq46 82.4 6e-11 >seq26 Length=66536344 Score = 311 bits (344), Expect = 7e-80 Identities = 561/816 (69%), Gaps = 3/816 (0%) Strand=Plus/Minus Query 18549 GATCGAACAGGAATCGGAACGTTATCTTTATTTGGAATGCAAGCTCGATACAATTTGCGA 18608 || || || || | ||| || || || | || || ||||| | ||||||| || || Sbjct 25930168 GACCGCACGGGCACCGGCACCTTGTCGGTGTTCGGCATGCAGGTGAGATACAACCTGAGA 25930109 Query 18609 AATGAATTTCCTCTTTTAACTACAAAGCGTGTTTTTTGGAGGGCCGTCGTGGAAGAGTTG 18668 ||||||||||||| | || || || || || || |||| || ||| |||| || ||| Sbjct 25930108 GATGAATTTCCTCTGCTCACAACCAAACGAGTGTTCTGGAAGGGCGTTTTGGAGGAATTG 25930049 Query 18669 TTATGGTTTATCCGCGGGTCAACCGATTCCAAAGAACTCGCCGCTAAAGATATACACATA 18728 | ||||||||| || || || || | |||||||| || | |||| | || Sbjct 25930048 CTGTGGTTTATCAAGGGATCCACAAATGCTAAAGAACTGTCCTCCAAAGGAGTGAGAATC 25929989 Query 18729 TGGGATATATACGGATCGAGCAAATTTCTAAATAGGAATGGCTTCCATAAAAGACACACG 18788 |||||| | || || | | ||||| | || || ||| | | |||| Sbjct 25929988 TGGGATGCCAATGGGTCCCGAGATTTTCTGGACAGCCTGGGATTCTCTGCACGACAGGAA 25929929 Query 18789 GGGGACCTTGGCCCCATTTACGGCTTCCAGTGGAGACATTTTGGAGCGGAATATAAAGAC 18848 ||||| || ||||| |||| || |||||||||||||||||||| || || || ||||| Sbjct 25929928 GGGGATCTGGGCCCAGTTTATGGTTTCCAGTGGAGACATTTTGGCGCAGACTACAAAGAT 25929869 Query 18849 TGTCAATCAAACTATTTACAGCAAGGAATCGATCAGCTGCAAACTGTTATAGATACAATT 18908 ||||| | || | |||||| | || |||||||||| || || || || || Sbjct 25929868 ATGGAATCAGATTACTCGGGTCAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACCATC 25929809 Query 18909 AAAACAAACCCAGAAAGCCGACGAATGATTATATCGTCTTGGAATCCAAAGGATATCCCC 18968 ||||| | ||| || | || |||| || || | | ||||| ||||| ||| | ||| Sbjct 25929808 AAAACCAGCCCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCAAAAGATCTTCCC 25929749 Query 18969 TTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAACGGTGAATTA 19028 | |||| ||| ||||| || || | | ||||| || || || || || || || | Sbjct 25929748 CTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTAGCGAATGGGGAGCTG 25929689 Query 19029 TCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTCAACATTGCT 19088 || ||||| | |||||||| ||||| ||||||||||| || || || ||||||||||| Sbjct 25929688 TCTTGCCAGCTCTACCAGAGGTCGGGAGATATGGGCCTGGGTGTGCCCTTCAACATTGCC 25929629 Query 19089 GGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAACCGGAGATTTA 19148 | ||||| || ||||||||||| | || || ||||| || || | || ||||| Sbjct 25929628 AGCTATGCCCTGCTTACCTACATGATTGCACACACCACAGGCCTAAAGCCAGGGGATTTT 25929569 Query 19149 ATTCATACAATGGGGGATGCACATATTTACTTGAATCATATAGATGCTTTAAAAGTGCAG 19208 | || || |||| ||||||||||||||| |||||||||| || | | ||| | ||| Sbjct 25929568 GTCCACACCTTGGGAGATGCACATATTTACCTGAATCATATCGAGCCCCTGAAAATTCAG 25929509 Query 19209 CTAGCTCGATCCCCAAAACCTTTTCCTTGCCTTAAAATTATTCGAAATGTAACAGA-TAT 19267 || ||| |||| |||||| || || |||||| ||||||| || ||| || Sbjct 25929508 CTTCAGCGAGAGCCAAGACCTTTCCCAAAGCTCAAAATTCTTCGAAAAGT-TGAGACAAT 25929450 Query 19268 AAACGACTTTAAATGGGACGATTTTCAGCTTGATGGATATAATCCACAccccccccTAAA 19327 | || || | | || || |||||| |||| || ||||||||||| || | | || Sbjct 25929449 TGATGATTTCAGAGTTGAAGACTTTCAGATTGAAGGTTATAATCCACATCCAGCGATTAA 25929390 Query 19328 AATGGAAATGGCTCTTTAATGGATTTTTAAATGTTG 19363 ||||||||||| | || | | ||||| || |||| Sbjct 25929389 GATGGAAATGGC-CGTTTAGAGTTTTTTCAAAGTTG 25929355 >seq8 Length=88571779 Score = 111 bits (122), Expect = 1e-19 Identities = 130/176 (74%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 18960 GATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC 19019 ||| | ||| | |||| ||| ||||| || || | | ||||| || || || || || Sbjct 15943053 GATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTAGCGAAT 15942994 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 || || | |||||||| | |||||||| ||||| ||||||||||| || || || ||| Sbjct 15942993 GGGGAGCTGTCCTGCCAGCTCTACCAGAGGTCGGGAGATATGGGCCTGGGTGTGCCCTTC 15942934 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 |||||||| | ||||| || ||||||||||| | || || | ||||| || || Sbjct 15942933 AACATTGCCAGCTATGCCCTGCTTACCTACATGATTGCACACATCACAGGCCTAAA 15942878 >seq13 Length=46045664 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 18960 GATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC 19019 ||| | ||| | |||| ||| ||||| || || | | || || || || || || || Sbjct 164366 GATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGCCAATTCTATGTAGCGAAT 164425 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 | || | || ||||| | |||||||| || || | ||||||||| || || || ||| Sbjct 164426 AGGGAGCTGTCTTGCCAGCTCTACCAGAGGTCAGGAGTTATGGGCCTGGGTGTGCCCTTC 164485 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAA 19135 |||||||| | ||||| || || |||||||| | || || | ||||| || || Sbjct 164486 AACATTGCCAGCTATGCCCTGCTCACCTACATGATTGCACACATCACAGGCCTAAA 164541 >seq46 Length=7398006 Score = 82.4 bits (90), Expect = 6e-11 Identities = 125/178 (70%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 18960 GATATCCCCTTAATGGTACTACCTCCATGTCACACGTTATGTCAGTTTTACGTTGCAAAC 19019 ||| | ||| | |||| ||| || || || || | | ||||| || || || | || Sbjct 7346878 GATCTTCCCCTGATGGCACTGCCCCCTTGCCATGCCCTCTGTCAATTCTATGTAGTGAAT 7346819 Query 19020 GGTGAATTATCCTGCCAAGTATACCAGAGATCGGGGGATATGGGCCTTGGGGTACCGTTC 19079 || || | || ||||| | |||||||| || || ||||||||||| || || || ||| Sbjct 7346818 GGGGAGCTGTCTTGCCAGCTCTACCAGAGGTCAGGAGATATGGGCCTGGGCGTGCCCTTC 7346759 Query 19080 AACATTGCTGGATATGCACTTCTTACCTACATAGTAGCGCATGTTACAGGACTTAAAA 19137 |||||||| ||||| || || |||||||| | || || | | ||| || |||| Sbjct 7346758 AACATTGCCATCTATGCCCTGCTCACCTACATGATTGCACACATCATAGGCCTAAAAA 7346701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399473155170075