Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq26 223 2e-53 seq4 136 3e-27 seq17 125 5e-24 seq84 104 2e-17 seq8 98.7 7e-16 >seq26 Length=66536344 Score = 223 bits (246), Expect = 2e-53 Identities = 493/737 (67%), Gaps = 2/737 (0%) Strand=Plus/Plus Query 101534 TAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATAT-AATGTC 101592 ||||| ||||| | ||| ||||| || ||||| ||||| ||| ||| | || ||| Sbjct 25929372 TAAACGGCCATTTCCATCTTAATCGCTGGATGTGGATTATAACCTTC-AATCTGAAAGTC 25929430 Query 101593 ATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAACGG 101652 || || | || |||||||| ||| |||| | || | | || |||| || || Sbjct 25929431 TTCAACTCTGAAATCATCAATTGTCTCAACTTTTCGAAGAATTTTGAGCTTTGGGAAAGG 25929490 Query 101653 TCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTGAGC 101712 ||| || |||| | ||| ||||| || | || || |||| | || || || || Sbjct 25929491 TCTTGGCTCTCGCTGAAGCTGAATTTTCAGGGGCTCGATATGATTCAGGTAAATATGTGC 25929550 Query 101713 ATCTCCTATAGTATGGATAAACTCTCCAGGCACTAGATTAGTGACATGAGCAATCATGCA 101772 |||||| | || |||| ||| || || ||| ||| ||| || ||||||||| | Sbjct 25929551 ATCTCCCAAGGTGTGGACAAAATCCCCTGGCTTTAGGCCTGTGGTGTGTGCAATCATGTA 25929610 Query 101773 AGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCTAACCCCATATCAGCTGATCT 101832 || | || | |||||| |||||||| || ||||| || | |||||||| | || || Sbjct 25929611 GGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGCACACCCAGGCCCATATCTCCCGACCT 25929670 Query 101833 TTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAAAATTGACTTAATACATGACA 101892 || || || || || || |||| |||| ||||| ||||||| | |||| || Sbjct 25929671 CTGGTAGAGCTGGCAAGACAGCTCCCCATTCGCTACATAGAATTGACAGAGGGCATGGCA 25929730 Query 101893 AGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCAAGCACACATTAACATCCTTCT 101952 ||| |||| |||| |||| ||| ||||| |||||||| | || ||||| Sbjct 25929731 AGGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACATGATGATTCTTCT 25929790 Query 101953 ATCTGTAGGGTTTGTTTTTATAGTATCAATCAACTGTTTTAATTGGTCAACTCCTTCTCC 102012 || |||| | ||||| || || ||||||| | || | ||||| ||||||| || Sbjct 25929791 GTCATCAGGGCTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTACTCCTTGACC 25929850 Query 102013 TTTATAATCGCGCCCAACACCTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATA 102072 ||||| | | | |||| || ||||| || ||||| |||||||| || ||||| Sbjct 25929851 CGAGTAATCTGATTCCATATCTTTGTAGTCTGCGCCAAAATGTCTCCACTGGAAACCATA 25929910 Query 102073 CACAGGTCCAAGATCTCCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCT 102132 || || || ||||| ||||| | || || | || || || | || | ||| || Sbjct 25929911 AACTGGGCCCAGATCCCCTTCCTGTCGTGCAGAGAATCCCAGGCTGTCCAGAAAATCTCG 25929970 Query 102133 AGATCCATTCGCATCCCAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGA 102192 || ||||| |||||||| || ||| || | || || ||||| | || || Sbjct 25929971 GGACCCATTGGCATCCCAGATTCTCACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGGA 25930030 Query 102193 TCCTCTGATAAACCACAACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGT 102252 ||| |||||||||||| || ||| || | ||| || |||| || |||| || || || Sbjct 25930031 TCCCTTGATAAACCACAGCAATTCCTCCAAAACGCCCTTCCAGAACACTCGTTTGGTTGT 25930090 Query 102253 TAAAAGTGGAAATTCAT 102269 | || |||||||||| Sbjct 25930091 GAGCAGAGGAAATTCAT 25930107 >seq4 Length=96435083 Score = 136 bits (150), Expect = 3e-27 Identities = 196/276 (71%), Gaps = 8/276 (3%) Strand=Plus/Plus Query 3978 CTTCTCATATACTTCAAATTTGTA--CTTAATACTTTTCTCTTCTTGCACATTAGAAAGA 4035 |||||| | ||||||| ||| || |||||| | | || || || || | |||||| Sbjct 25801587 CTTCTCCTGGACTTCAAGTTTATATACTTAATGCCCCTTTCCTCCTGGACCTCAGAAAGG 25801646 Query 4036 ACACTTGGATATTCTATCAAAAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTG 4095 |||| || ||||| | | |||| ||| | | | ||||| |||||| |||| || Sbjct 25801647 ACACCTGTGCATTCTGGGAGATGTTTATATCTTCCCAAATCAATTTCTGGGAAAACCATG 25801706 Query 4096 TCACATTCAAAGTCTTGCATGATCCTAGTCA------CAAACAGTTTAAGATCGCATGGA 4149 ||| |||| | || ||||||||||| ||| |||||||||| || | ||| Sbjct 25801707 CCACTTTCAGATTCCTGCATGATCCTTGTCGTAATTGCAAACAGTTTGAGGTGCTCTGGC 25801766 Query 4150 TAACTCATAGCTTCTTTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTA 4209 | | |||| ||| | | | |||||||| |||| | |||| ||| ||||||||||| Sbjct 25801767 TGATTCATGGCTCCCTCGTGAACAGAACTGCCTCTGGCTGTCCAAACCTTGTCTACTTTA 25801826 Query 4210 TTTGCTAATTCTGGCTGTTCGGTAAGTTTTAAAGCA 4245 |||| |||||| || ||||| ||||||||||| ||| Sbjct 25801827 TTTGATAATTCCGGTTGTTCAGTAAGTTTTAAGGCA 25801862 >seq17 Length=65020687 Score = 125 bits (138), Expect = 5e-24 Identities = 99/119 (83%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 4165 TTATACACAGAACTACCTCCAATTATCCAGACCATGTCTACTTTATTTGCTAATTCTGGC 4224 || || || ||||| ||||||| |||||| ||||||||||||||||||||||| ||||| Sbjct 8169324 TTGTAAACGGAACTGCCTCCAACTATCCAAACCATGTCTACTTTATTTGCTAACTCTGGT 8169383 Query 4225 TGTTCGGTAAGTTTTAAAGCATCATCTAAACTCTTAGCTAAAAAATGAGCTCTATGTGG 4283 ||||| ||||||||| |||||||| | ||| || || | ||||||||||| ||||| Sbjct 8169384 TGTTCAATAAGTTTTAGGGCATCATCCAGACTTTTGGCAAGAAAATGAGCTCCTTGTGG 8169442 Score = 102 bits (112), Expect = 6e-17 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 4290 CTTTAGTTCCTTGCTGAGAACAACATTAATTCTGCCTTTTAAAGGCCGGTTCTTCTCAGG 4349 ||| || || |||||||||| | ||| |||||| |||||||||| || ||||||||||| Sbjct 8177118 CTTGAGCTCTCTGCTGAGAACTATATTGATTCTGTCTTTTAAAGGTCGATTCTTCTCAGG 8177177 Query 4350 AATTGAGAACCAAGTCTTTTTACCCATAATCACTAAATTCTGTTTATCT 4398 ||| |||||||| || || ||||||||||| | ||||||||| || Sbjct 8177178 AATGGAGAACCAGGTTTTCCGGCCCATAATCACCAGGTTCTGTTTACCT 8177226 Score = 84.2 bits (92), Expect = 2e-11 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 4056 AAGTTTGTATTTCTCTAGATCAAATTCTGGAAAAAAGGTGTCACATTCAAAGTCTTGCAT 4115 ||||||||||||| | | ||||| |||||| || || ||||||| |||||| || ||||| Sbjct 8166303 AAGTTTGTATTTCCCCAAATCAATTTCTGGGAAGAACGTGTCACTTTCAAATTCCTGCAT 8166362 Query 4116 GATCCTAGTCACAAACAGTTTAAGATCGCATGGATAACTCATAGCTTCTTT 4166 ||||| || | || ||| | |||| || ||| | | ||| ||||| || Sbjct 8166363 AATCCTTGTTATGAAGAGTCTGAGATGGCCTGGCTGATCCATGGCTTCCTT 8166413 >seq84 Length=2633975 Score = 104 bits (114), Expect = 2e-17 Identities = 165/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Minus Query 26936 TTAGTCTACATTGTGAACAATGGGAGTAACGCATGTGCAGCCTACAGTCACTAGCATCTT 26995 |||| | || | | | || |||| | ||||| |||||||| ||| ||| |||||||| Sbjct 2133178 TTAGGCCACGTGGCGGACGATGGAGGACACGCAGGTGCAGCCCACACCCACCAGCATCTT 2133119 Query 26996 CTCTAGCCTAAATGAATTAGGGCAGGGTTGATGCCCTTTGCGCACCACTAGAATCTCTTG 27055 ||| | || || || || ||| | | || | | || || || |||||||| Sbjct 2133118 CTCCACCCGGAAGGAGAAGGGACAGTTCTCAGGCTCCCTCTTCAGGACCAGGATCTCTTG 2133059 Query 27056 TTGGATAGGGACTGAGTTCATGTGGTAGTCTACATTCCCATCAGCATTAACACATCCTAA 27115 |||| | || ||||||||||||| || | ||||| | |||||| ||||| | Sbjct 2133058 CTGGAGGAGAACAGAGTTCATGTGGTGCTCCAACTTCCCCTGAGCATTGACACAGCGCTG 2132999 Query 27116 GTAGCGACACTTTGCTTCCCAAATCACAGAGGGATATCTATCTTGATCTTCATTGCG 27172 || ||| |||| ||| ||||| |||||||| |||||||| | | || |||||||| Sbjct 2132998 GTGGCGGCACTGTGCCTCCCAGATCACAGAAGGATATCTGTTAGGGTCCTCATTGCG 2132942 >seq8 Length=88571779 Score = 98.7 bits (108), Expect = 7e-16 Identities = 164/237 (69%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 102033 CTTTATATTCTGCTCCGAAATGCCTCCACTGAAATCCATACACAGGTCCAAGATCTCCTT 102092 |||| || ||||| || ||||| |||||||| || ||||| || || || ||||| |||| Sbjct 15948547 CTTTGTAGTCTGCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGATCCCCTT 15948606 Query 102093 CATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCCCAAA 102152 | | || || | || || || | || | ||| || || ||||| |||||||| | Sbjct 15948607 CCTGTCGTGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGA 15948666 Query 102153 TGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACA 102212 | ||| || | || || ||||| | || ||||| |||||||||||| || Sbjct 15948667 TTCTCACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGGATCCCTTGATAAACCACAGCA 15948726 Query 102213 GTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAATTCAT 102269 ||| || | ||| || |||| || |||| || || || | || |||||||||| Sbjct 15948727 ATTCCTCCAAAACGCCCTTCCAGAACACTCGTTTGGTTGTGAGCAGAGGAAATTCAT 15948783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361223308585085