Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq4 372 4e-98 seq26 343 2e-89 seq87 251 8e-62 seq9 187 3e-42 seq42 167 3e-36 seq73 113 5e-20 seq61 93.3 5e-14 seq4671 84.2 3e-11 >seq4 Length=96435083 Score = 372 bits (412), Expect = 4e-98 Identities = 644/927 (69%), Gaps = 18/927 (2%) Strand=Plus/Plus Query 23793 AAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTTTGG 23849 |||||| |||| || | ||| ||| ||| || | ||||| || ||||| | || Sbjct 65463857 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 65463916 Query 23850 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATG 23909 || || ||||| || || || || || || || || ||||||| ||| |||||||||||| Sbjct 65463917 TACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTTCCATG 65463976 Query 23910 AAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAATCTA 23969 || || ||||||| || || | || | | || || | || || | || Sbjct 65463977 AAGTCAAATGGATTTTCTACTTTGAAAATCTTGCTGAACCCTAGCTCCAGCATAAGCCTG 65464036 Query 23970 TCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 24029 || || || || || || || ||||||| | || ||||| || || || || || Sbjct 65464037 TCCGCCACGAATTCGATGTACTGCTTCATCAGGGCGCAGTTCATCCCGATGAGCTTCACA 65464096 Query 24030 GGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT-AGATCT 24088 || || ||| | || ||||| || || || | || |||| | ||||| | ||| Sbjct 65464097 GGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTGCGT---TGATAATGATTTCT 65464153 Query 24089 T--ACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 24144 | ||| ||| || ||| || ||| | || | ||||||| || || || Sbjct 65464154 TGTACTCTTTGCTCCGGCGGCTTGTGTACCAGG--TGCCTGAACATCAGGCAGGCAAAGC 65464211 Query 24145 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 24204 ||||||| |||||| ||||| ||||| | |||||||||||||| || || ||||| | Sbjct 65464212 AACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCA 65464271 Query 24205 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTA 24264 | || || || || ||||| ||||| ||| |||| || ||||| |||| || ||||| | Sbjct 65464272 GTCCCCGTTTCTTGAGCCAGAATATTGACACAAAGGAGCCAGAGAAGAGGATCCCTTCCA 65464331 Query 24265 CTGCCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTA-TCCACTTT 24320 | || |||||||| | || || ||||||||| | | | |||| | |||| Sbjct 65464332 CAGCAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCCAATCCAACGC 65464391 Query 24321 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 24380 | ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct 65464392 AGGGCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATAT 65464451 Query 24381 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATG- 24439 | | || || |||||||| || ||||| || | ||||| |||||||| ||||| Sbjct 65464452 TCCCTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGT 65464511 Query 24440 AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 24499 |||||||| ||||| ||||| || || |||||||| | ||||| |||| ||| ||||| Sbjct 65464512 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTC 65464571 Query 24500 TATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 24559 | | || || || | | |||||||| ||||| || ||||| || ||||| || || Sbjct 65464572 TTGGCTGAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTCGCAGCAAAGAAAGC 65464631 Query 24560 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATC 24619 || || || |||||||| | | ||||| ||| | || | ||| | | ||||| Sbjct 65464632 CAGGACGTGAGATATAAAATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATC 65464691 Query 24620 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 24679 || || | || || || || | ||||| || || ||||| || || || ||||| | Sbjct 65464692 CTTGGAGAGGTCGACCTCCTCAGCCGTCCAGAAGGAAGCCTCGGCTTTCTTGTACATCTG 65464751 Query 24680 CCAGATGTCATGATATTGAATTGGAAA 24706 |||||| ||||| |||| || ||||| Sbjct 65464752 CCAGATATCATGGTATTCGATGGGAAA 65464778 >seq26 Length=66536344 Score = 343 bits (380), Expect = 2e-89 Identities = 643/936 (69%), Gaps = 23/936 (2%) Strand=Plus/Plus Query 23793 AAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTTTGG 23849 |||||| |||| || | |||| ||| ||| || | || || || |||| | || Sbjct 31519072 AAGTCAGCATCCAAGGTAAAAGAATTCTCTGCTGAATTTGAAATCACCTCCATCCTCTGA 31519131 Query 23850 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATG 23909 || |||||||| || || || | || || || || ||||||| ||| |||||||||| | Sbjct 31519132 TACTCACCCACTCGCTTCTCAAGGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCACG 31519191 Query 23910 AAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAATCTA 23969 || || | ||||| || || | || | | || || | || || | | Sbjct 31519192 AAGTCAAAAGGATTTTCTACTTTGGAAATCTTGCTGAACCCTAGCTCCAGCATAAGCGTG 31519251 Query 23970 TCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 24029 || || || || || || || ||||| | || ||||| | || || || || Sbjct 31519252 TCGGCCACGAATTCGATGTACCGCTTCATGAGGGTGCAGTTCATCCTGATGAGCTTCACA 31519311 Query 24030 GGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT-AGATCT 24088 || || ||| | || ||||| | || | || || |||| | ||||| | ||| Sbjct 31519312 GGCAGGGCCTCCGTGAGAAACACCTGCTTTATCCTCACTGCGT---TGATAATGATTTCT 31519368 Query 24089 T--ACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 24144 | ||| ||| || ||| || ||| | || | ||||||| || || || Sbjct 31519369 TGTACTCTTTGCTCTGGCGGCTTGCTTACCAGG--TGCCTGAACATCAGGCAGGCAAAGC 31519426 Query 24145 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 24204 | ||||||| || ||| ||||| ||||| | || |||||||| || || || ||||| | Sbjct 31519427 CACAGTGTAAACGCTCATCTCTGCTAATAAGCTCTTTGGAAAATGTAAGGCCAGGCATCA 31519486 Query 24205 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTA 24264 | || | || || ||||| ||||| |||||||| || ||||| ||||| || |||||| Sbjct 31519487 GTCCCTGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATGTCTTCTA 31519546 Query 24265 CTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGT----ATCCACTTT 24320 | || |||||||| | || |||||||||||| | | | | | ||||| Sbjct 31519547 CAGCAGCAAAGGCCACAACTCTTTCTCCATAGGTAGTCTTTTTGTCTCCAAATCCAACGC 31519606 Query 24321 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAG 24380 | ||||| || |||| |||||| ||||||||||||||||| |||||||| |||||||| Sbjct 31519607 AGGGCCCAGTCAGCCTACTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATAT 31519666 Query 24381 tttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGA 24440 | | || || |||||||| ||| ||||| | ||||| |||||||| ||||| Sbjct 31519667 TCCCTCTCTTTGGAATCTTTAA----TGTGTCAATGAGGAGACTGTACATTTCAGAATGT 31519722 Query 24441 ATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||||| ||||| ||||| || || |||||||| | ||||| |||| ||| |||||| Sbjct 31519723 TTGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCT 31519782 Query 24501 ATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCC 24560 | ||| || || | | |||||||| ||||| || |||||||||||||| || ||| Sbjct 31519783 TGGCTAAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTGGCTGCAAAGAAAGCC 31519842 Query 24561 AATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG-ATATC 24619 | || || |||||||| | | ||||| ||| | || |||| | ||| ||||| Sbjct 31519843 AGGACGTGAGATATAAAATGTCTCTCGTCAGGTTTCAG-CGCTTCCTAGTGTTGAATATC 31519901 Query 24620 TTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATT 24679 || || | ||||| || || ||||||| || | ||||| || || || ||||| | Sbjct 31519902 CTTGGAGAGGTCCACCTCGTCAGCTGTCCAGAAGAAGGCCTCGGCTTTCTTGTACATCTG 31519961 Query 24680 CCAGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 |||||| ||||| |||| ||| ||||| | ||| || Sbjct 31519962 CCAGATATCATGGTATTCAATGGGAAAGACAACGAA 31519997 >seq87 Length=2570995 Score = 251 bits (278), Expect = 8e-62 Identities = 351/490 (72%), Gaps = 4/490 (1%) Strand=Plus/Plus Query 24220 GCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 24279 |||| ||||| ||| |||| || ||||| ||||| || |||||||| || ||||||| | Sbjct 1819200 GCCAGAATATTGACACAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCA 1819259 Query 24280 TAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCT 24336 || || ||||||||| | | | |||| ||||| | | ||| ||||||| Sbjct 1819260 CAACTCGTTCTCCATAGGTAGCATCTTTGTCCCCAATCCAATGCACGGTCCAGTCGGCCT 1819319 Query 24337 TCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTAT 24396 ||||||| ||||||||||||||||| |||||||| | ||||| | | || || || Sbjct 1819320 TCTTTTTCACACAAGGCATTGTCTCAATAGCATTGACAAGATATTCCCTCTCTTTGGAAT 1819379 Query 24397 CTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCA 24456 |||||| || || |||| | ||||| |||||||| ||||| |||||||| ||||| | Sbjct 1819380 CTTTAATGTAGGTGACAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAA 1819439 Query 24457 TTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACAAAATCGTTCTG 24516 |||| || || |||||||| || ||||| |||| ||| |||||| | ||| | || Sbjct 1819440 TTTGGAAGCCATAGAAACAGCTGGCCTCTGTAACCTGAACTTCTTGGCTAAAGCACTCGA 1819499 Query 24517 CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 24576 | | ||||||||| |||| ||| ||||| | |||| || |||| || || ||||| Sbjct 1819500 CCAGATTTTCATTGACTAATCCATCACTCGTCACAAAGAAAGCCAGGACGTGGGATATAA 1819559 Query 24577 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTT 24636 ||| | | ||||| ||| | || | ||| | | ||||| || || | ||||| | Sbjct 1819560 AATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACCT 1819619 Query 24637 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATT 24696 | || | |||| || || ||||| || || || ||| | | |||||| ||||| || | Sbjct 1819620 CCTCAGCCATCCAGAAGGAGGCCTCGGCTTTCTTGTAC-TCTGCCAGATATCATGGTACT 1819678 Query 24697 GAATTGGAAA 24706 || ||||| Sbjct 1819679 CGATAGGAAA 1819688 >seq9 Length=86001432 Score = 187 bits (206), Expect = 3e-42 Identities = 402/596 (67%), Gaps = 14/596 (2%) Strand=Plus/Plus Query 23793 AAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTTTGG 23849 |||||| |||| || | ||| ||| ||| || | ||||| || ||||| | || Sbjct 36369702 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 36369761 Query 23850 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATG 23909 || | ||||| || || || || || || || || ||||||| ||| |||||||||||| Sbjct 36369762 TACTTGCCCACGCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 36369821 Query 23910 AAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAATCTA 23969 | || | ||||| || || | || | | ||||| | || || | || Sbjct 36369822 GAGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAATCCTAGCTCCAGCATAAGCCTG 36369881 Query 23970 TCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 24029 || || || || || || || ||||||| || | || || || || || || Sbjct 36369882 TCCGCCACGAATTCGATGTAGTGCTTCATCAGGGTGCAGCTTATCCCGATGAGCTTCACA 36369941 Query 24030 GGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTT 24089 || || ||| | || ||||| || || || || || |||| | || || | | Sbjct 36369942 GGCAGGGCCTCCGTGAGAAACTCCTGCTCTATCCTCACTGCGTTGATGATGATTTCTTGT 36370001 Query 24090 ACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGC 24147 ||| ||| || ||| || ||| | || | ||||||| || || || || | Sbjct 36370002 ACTCTTTGCTCCGGCGGCTTGTGTACCAGG--TGCCTGAACATCAGGCAGGCAAAGTCAC 36370059 Query 24148 AGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGC 24207 |||||| |||||| ||||| ||||| | |||||||||||||| || || ||||| || | Sbjct 36370060 AGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAGTC 36370119 Query 24208 CACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTG 24267 | | || | ||||| ||||| |||||||| || |||| |||| || ||||| | | Sbjct 36370120 CCAGTTTCCTGAGCCAGAATATTGACGCAAAAGAGCCAG---AGAAGATCCCTTCCATAG 36370176 Query 24268 CCGCAAAGGCAATAAGTCTTTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTGAG 24324 | |||||||| | || || ||||||||| | | | |||| ||||| | | Sbjct 36370177 CAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCAATCCAACGCAGGG 36370236 Query 24325 CCCAATCGGCCTTCTTTTT-TACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379 |||| || ||||||||||| ||||||||||||||||| |||||||| ||||| || Sbjct 36370237 CCCAGTCAGCCTTCTTTTTCCACACAAGGCATTGTCTCAATAGCATTGAAGAGCTA 36370292 >seq42 Length=9663327 Score = 167 bits (184), Expect = 3e-36 Identities = 143/177 (81%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 24324 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 24383 ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| | Sbjct 3435477 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 3435418 Query 24384 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 24443 | || || |||||||| || ||||| || | ||||| |||||||| ||||| ||| Sbjct 3435417 CTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATG 3435358 Query 24444 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 24500 ||||| ||||| ||||| || || |||||||| | ||||| |||| ||| |||||| Sbjct 3435357 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCT 3435301 Score = 161 bits (178), Expect = 1e-34 Identities = 344/508 (68%), Gaps = 13/508 (3%) Strand=Plus/Minus Query 23793 AAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTTTGG 23849 |||||| |||| || | ||| ||| ||| || | ||||| || ||||| | || Sbjct 3436142 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 3436083 Query 23850 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATG 23909 || | ||||| || || || || || || || || ||||||| ||| |||||||||||| Sbjct 3436082 TACTTGCCCACGCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 3436023 Query 23910 AAATCGGATGGATTGGTAACATTATAGATTCTTTTAAATCCCAATTCAGAAATCAATCTA 23969 | || | ||||| || || | || | | ||||| | || || | || Sbjct 3436022 GAGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAATCCTAGCTCCAGCATAAGCCTG 3435963 Query 23970 TCTGCGACAAACTCCATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 24029 || || || || || || || ||||||| || | || || || || || || Sbjct 3435962 TCCGCCACGAATTCGATGTAGTGCTTCATCAGGGTGCAGCTTATCCCGATGAGCTTCACA 3435903 Query 24030 GGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT-AGATCT 24088 || || ||| | || ||||| || || || || | |||| | ||||| | ||| Sbjct 3435902 GGCAGGGCCTCCGTGAGAAACTCCTGCTCTATCCTCAAGGCGT---TGATAATGATTTCT 3435846 Query 24089 T--ACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 24144 | ||| ||| || ||| || ||| | || | ||||||| || || || | Sbjct 3435845 TGTACTCTTTGCTCCGGCGGCTTGTGTACCAGG--TGCCTGAACATCAGGCAGGCAAAGT 3435788 Query 24145 CGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 24204 | ||||||| |||||| ||||| ||||| | |||||||||||||| || || ||||| | Sbjct 3435787 CACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCA 3435728 Query 24205 GGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTA 24264 | || || || || ||||| ||||| |||||||| || ||||| ||||| || ||||| | Sbjct 3435727 GTCCCCGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATCCCTTCCA 3435668 Query 24265 CTGCCGCAAAGGCAATAAGTCTTTCTCC 24292 | || |||||||| | || || |||||| Sbjct 3435667 CAGCAGCAAAGGCCACAACTCGTTCTCC 3435640 Score = 158 bits (174), Expect = 1e-33 Identities = 135/167 (81%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 24324 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 24383 ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| | Sbjct 3436363 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 3436304 Query 24384 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 24443 | || || |||||||| || ||||| || | ||||| |||||||| ||||| ||| Sbjct 3436303 CTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATG 3436244 Query 24444 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 24490 ||||| ||||| ||||| || || |||||||| | ||||| ||||| Sbjct 3436243 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAAT 3436197 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 24157 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 24216 |||| ||||| ||||| | |||||||||||||| || || ||||| || || || || | Sbjct 3436661 CCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCT 3436602 Query 24217 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 24276 | ||||| ||||| |||||||| || ||||| ||||| || ||||| || || ||||||| Sbjct 3436601 TGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACAGCAGCAAAGG 3436542 Query 24277 CAATAAGTCTTTCTCC 24292 | | || || |||||| Sbjct 3436541 CCACAACTCGTTCTCC 3436526 >seq73 Length=3316092 Score = 113 bits (124), Expect = 5e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 53150 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 53209 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 2397345 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 2397286 Query 53210 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 53269 || |||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 2397285 GATTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 2397226 Query 53270 CTATTTCTAAGACCGTA 53286 || ||||| | ||| || Sbjct 2397225 CTGTTTCTTATACCATA 2397209 Score = 87.8 bits (96), Expect = 2e-12 Identities = 119/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 |||| || | ||| |||||||||||||| | || || || || || || || |||| | Sbjct 2379301 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 2379242 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | ||||| || || || | |||||| | || || ||| | || || | || ||| |||| Sbjct 2379241 TAGCATAGTCAGGGTGCTTTGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 2379182 Query 54888 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 54933 ||| || || || ||||| | || | |||||||| || ||||| Sbjct 2379181 GTTCCACTGTGGTGACTCCGCTGTACAGGCCTTGGATTACTTTCAT 2379136 Score = 86.0 bits (94), Expect = 7e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 54025 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 54084 || |||||| ||||| |||||||| ||||||||||| || | || ||||| | || || Sbjct 2391265 CTCCACTCGCTTCATGAAGAGATCCGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCG 2391206 Query 54085 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 54144 || || || || ||||| ||||| || | || |||||| | | || || ||||||| Sbjct 2391205 CTGCTCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAATGCCA 2391146 Query 54145 CGGTTCCAAGTATAT 54159 || |||| ||| || Sbjct 2391145 AGGCTCCAGGTAAAT 2391131 >seq61 Length=4506808 Score = 93.3 bits (102), Expect = 5e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 24159 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 24218 || || || || || | ||| || || || |||||||||||||| ||||| | ||| || Sbjct 586187 TCATCCCTGCTGATGAGTTCATTCGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 586128 Query 24219 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGC 24277 ||||| || || | |||||||| ||||| ||||||| ||||| || || |||||||| Sbjct 586127 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGC 586069 >seq4671 Length=1285 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 24324 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 24379 ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct 34 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATA 89 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593674584670800