Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_001731.1 Length=190289 Score E Sequences producing significant alignments: (Bits) Value seq4 246 4e-60 seq13 199 5e-46 seq30 109 7e-19 seq1 95.1 1e-14 >seq4 Length=96435083 Score = 246 bits (272), Expect = 4e-60 Identities = 271/361 (75%), Gaps = 0/361 (0%) Strand=Plus/Minus Query 83033 TAGTAGCCGCGCGCTGGCGGGGGGAGCAGGGCCTCGATGTCGGGCTCCACGGCCAGGGTC 83092 ||| |||||| | || ||| |||||||| || ||||| || || | | | | ||| Sbjct 81264112 TAGGAGCCGCTAGGCTGCTGGGACAGCAGGGCTTCTATGTCAGGTTCGATGTCGATGGTG 81264053 Query 83093 TGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCG 83152 | ||||| |||||||||||||||| || |||||| | ||||||| |||||||||| Sbjct 81264052 CGAAAGCGGCGGCTGTACCTGCGCACTGGAACGCCGTCCGGGCCCACCAGGAACTTCTCG 81263993 Query 83153 AAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTC 83212 ||||||||||| | |||||||||||||||||||||||| ||| || ||||||| || Sbjct 81263992 AAGTTCCAGGCAATGTCGTTGCGGCACACTGGAGACCAAATGATGTACTTGGGGTCGGTC 81263933 Query 83213 ACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGC 83272 | ||||| || ||||| || ||||| |||| | ||| || ||||||| |||||| Sbjct 81263932 ATGAGCGCACTGGGCTCGTCACTGGGCGCTGGCAAAGACTCCCGCAGGAAGGTAAAGAGC 81263873 Query 83273 GGATGTGCCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAG 83332 ||||| ||| | |||| || ||||||||||||||||| | ||||||| || ||||| Sbjct 81263872 GGATGAGCCTTCTCACCATTCACCTCGCACTTCTCGAACAATGTAAAGTTGGGTTCGAAC 81263813 Query 83333 CCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCC 83392 || ||||| |||| | ||| |||||| || ||||| | |||| ||| || ||| Sbjct 81263812 CCCCCACCAGGTCGGATATACTTGAGGGAATTCAGAATCTCTTCGTTCTTGGCATTCTCC 81263753 Query 83393 T 83393 | Sbjct 81263752 T 81263752 Score = 163 bits (180), Expect = 3e-35 Identities = 161/208 (77%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 83391 CCTGGTGACCGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGC 83450 |||| || |||||||| || || ||||| || ||||| ||||| || || | || |||| Sbjct 81263537 CCTGATGTCCGAACTGATTGCAGGGGAAACCGAGCACCACCAGGCCACGGGGCCCGAGGC 81263478 Query 83451 GCCGCTGCAGCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTA 83510 | | |||||| |||||||||| ||||| |||||| ||| | ||||||||||| || | Sbjct 81263477 GTCTCTGCAGATCGTTCATCTCGGTGTAGTCCCGGGTCGTTGTGCCTCAGAGGGATGCGA 81263418 Query 83511 CGTTCTCGATGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGG 83570 | ||||| || |||| ||| |||||| | | |||| | ||||||||| ||||| || | Sbjct 81263417 CATTCTCAATAAGCAGCACCTTGCCCCGCAGGGAGCCCAGGCTCACAGGCTCTCCGCCCG 81263358 Query 83571 TAATCGGGCGTGCTGAGAAGGCGTACAC 83598 | | |||||| || |||||||| ||||| Sbjct 81263357 TGAGCGGGCGCGCGGAGAAGGCATACAC 81263330 >seq13 Length=46045664 Score = 199 bits (220), Expect = 5e-46 Identities = 343/493 (70%), Gaps = 15/493 (3%) Strand=Plus/Minus Query 83100 GGTGGCTGTACCTGCGCACGGGCGTGCCGTCAGCACCCACCAAGAACTTCTCGAAGTTCC 83159 || ||||||||||||||| || | || | ||||||| ||||||| |||||||| Sbjct 17996680 GGCGGCTGTACCTGCGCATTGGAACACTTTCCGGGCCCACCAGGAACTTCAAGAAGTTCC 17996621 Query 83160 AGGCCACGTCGTTGCGGCACACTGGAGACCAGGCAATGAGCTGGGGGTCGCTCACGAGCG 83219 |||| | | ||||||||||||||| |||||| |||| || ||||||| ||| ||||| Sbjct 17996620 AGGCAATGCCGTTGCGGCACACTGAAGACCA---AATGCACTTGGGGTCGGTCATGAGCG 17996564 Query 83220 TGCTCATGTCGTCGCTAGGCGCCGGCAGGGCCTCTCGTAGGAAGGCGAAGAGCGGATGTG 83279 | || || || ||||| |||| | ||| || ||||||| |||||||| || | Sbjct 17996563 CAGTGGGATCTTCACTGGGCGCTGGCAAAGACTCCCGCAGGAAGGTAAAGAGCGGGTGAG 17996504 Query 83280 CCCTTGCACCGTTGACCTCGCACTTCTCGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCC 83339 || | ||||||| ||||||||||||||||| | ||||||| || ||||| || | Sbjct 17996503 CCTTCTCACCGTTCACCTCGCACTTCTCGAACAATGTAAAGTTGGGTTCGAACCCCCGAC 17996444 Query 83340 CAGGACGGACGTGCTTCAGGGAAGGCAAGATCTCGGCATTCTGGGCGTTTTCCTGGTGAC 83399 | || |||| | ||| |||||| || ||||| || |||| || | Sbjct 17996443 CCGGTCGGATATACTTGAGGGAATTCAGAATCTC----TT-----CGTTCTCAATCAGTT 17996393 Query 83400 CGAACTGGTTACACGGGAACCCAAGCACTACCAGCCCCCGAGCTCCTAGGCGCCGCTGCA 83459 | ||||| || |||| ||| | |||| | ||| || || || || | | | | ||||| Sbjct 17996392 CCAACTGATTGCACGAGAAACGGAGCATCATCAGGCCACGGGC-CCGAAGTGTCTCTGCA 17996334 Query 83460 GCTCGTTCATCTGAGTGTACTCCCGGACCGTGCTACCTCAGAGGGACGCTACGTTCTCGA 83519 | || |||||||| || || || || | | | ||||||||| | || ||||| | Sbjct 17996333 GATCTTTCATCTGGGTATAGTCAGGGGTCATAGTGTGTCAGAGGGA-TCGACATTCTCAA 17996275 Query 83520 TGAGCAAGACCCGGCCCCGTAAGAAGCCTAAGCTCACAGGTTCTCCTCCGGTAATCGGGC 83579 |||||| ||| | |||| | | |||| | ||||||||| | || || | | ||| Sbjct 17996274 TGAGCAGCACCTTGTCCCGCATGGAGCCCAGGCTCACAGGATTCCCACCCACCAGCAGGC 17996215 Query 83580 GTGCTGAGAAGGC 83592 ||| |||||||| Sbjct 17996214 -TGCAGAGAAGGC 17996203 >seq30 Length=41355009 Score = 109 bits (120), Expect = 7e-19 Identities = 165/230 (72%), Gaps = 5/230 (2%) Strand=Plus/Plus Query 50466 TGCTCGTGTACATGTTTCCAGAGCTCTTTACTGCGGAGAACCTGCACACGCACTTCAACT 50525 |||| ||| || |||| || ||||||||||| |||||||||| || ||| | ||||| Sbjct 29236449 TGCTAGTGCACCTGTTCCCGGAGCTCTTTACCCACGAGAACCTGCGCAAGCAGTACAACT 29236508 Query 50526 GCTACGGCTCCATGGGCAAG-CGCAGGCTCGACCCGCTACGCCTGCGCTTGCTCCGGCAC 50584 || ||||||| |||||||| ||| ||| ||||| ||| | | || |||| ||| Sbjct 29236509 GCAGCGGCTCCCTGGGCAAGAAGCA-GCTGGACCCAGCCCGCATCAGGCTGATCCGCCAC 29236567 Query 50585 TATGTGCAGTTGCTGCACCCGGCGGCGCGCAACGAGCGCGTGTGGATCACAAAGTTCCTG 50644 || |||||| |||| |||| ||| ||||| |||||||||| |||| || Sbjct 29236568 TACGTGCAGCTGCTCTACCCTCGGGCCAAGAACGACCGCGTGTGGACTCTGGAGTTTGTG 29236627 Query 50645 GCGTGCCTGGACGAGCGCTGCCGGCGCCGCTGCGCACGGA-CACAGGCGC 50693 | ||||| |||||||| |||||| | | |||||| || |||||| Sbjct 29236628 GGCAAGCTGGATGAGCGCTGTCGGCGCAG--GGACACGGAGCAGAGGCGC 29236675 >seq1 Length=126672627 Score = 95.1 bits (104), Expect = 1e-14 Identities = 220/329 (67%), Gaps = 2/329 (1%) Strand=Plus/Plus Query 83068 GATGTCGGGCTCCACGGCCAGGGTCTGGCAGCGGTGGCTGTACCTGCGCACGGGCGTGCC 83127 |||||| ||||| | | | ||| ||| || | ||||||| | || | ||| || Sbjct 14757264 GATGTCTGGCTCTATGTTGATGGTTTGGAAGGTGCGGCTGTAGCGACGGAACGGCTCCCC 14757323 Query 83128 GTCAGCACCCACCAAGAACTTCTCGAAGTTCCAGGCCACGTCGTTGCGGCACACTGGAGA 83187 || | ||| | | ||||||||| |||||||||||||| || ||||| ||| ||| Sbjct 14757324 TTCTGGACCTATGAGGAACTTCTCAAAGTTCCAGGCCACATCTGAGCGGCGCACCGGACT 14757383 Query 83188 CCAGGCAATGAGCTGGGGGTCGCTCACGAGCGTGCTCATGTCGTCGCTAGGCGCCGGCAG 83247 ||| ||||||| ||| ||| ||| ||| | | ||| || ||| ||||| Sbjct 14757384 CCACATGATGAGCTTGGGATCGGTCATGAGGGAGAATGGGTCATCATAAGGGTAGGGCAG 14757443 Query 83248 GGCCTCTCGTAGGAAGGCGAAGAGCGGATGTGCCCT-TGCACCGTTGACCTCGCACTTCT 83306 ||| ||| ||||||||| ||||| | | ||| ||||||||||| ||||| | Sbjct 14757444 CTTGTCTTTCAGGTAGGCGAAGACTGGATGCTCGTTCTGC-CCGTTGACCTCACACTTTT 14757502 Query 83307 CGAAGAGCATAAAGTTCGGCTCGAAGCCGTTCCCAGGACGGACGTGCTTCAGGGAAGGCA 83366 | ||| | ||| | |||| | | || ||| || ||||| | ||| ||| || Sbjct 14757503 GGGTAAGCCTGAAGGTGGGCTGGTACCCACCCCCGGGGCGGACATACTTGAGGCTGTTCA 14757562 Query 83367 AGATCTCGGCATTCTGGGCGTTTTCCTGG 83395 |||||| ||||||| ||| |||||| Sbjct 14757563 GGATCTCCTCATTCTGACAGTTCTCCTGG 14757591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608748590903400