Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq7 145 6e-30 seq2 123 2e-23 seq40 105 6e-18 seq38 84.2 2e-11 >seq7 Length=85103860 Score = 145 bits (160), Expect = 6e-30 Identities = 160/213 (75%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||||| || || ||||| ||||| | |||||| || | || Sbjct 11188141 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCT 11188082 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 |||||||||||||| ||| | || || ||||||||||| ||| | |||||||||||| Sbjct 11188081 TCCAGCTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC 11188022 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | ||| || |||| |||||| |||| ||| |||||| Sbjct 11188021 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTC 11187962 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATT 21176 || || ||||| ||||| ||||| || |||||| Sbjct 11187961 TTACCAGTTAAGGTTTTCACAAAGATCTGCATT 11187929 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 || |||| |||| |||||||| || || ||||| ||||| | |||||| | | || Sbjct 11188369 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCAGCCATCT 11188310 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||| |||||| ||| | || || ||||||||||| ||| | ||| |||||||| Sbjct 11188309 TCCAGCTCTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCC 11188250 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 ||||||| || || | ||| || |||| |||||| || | ||| |||||| Sbjct 11188249 TGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTC 11188190 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 ||||| | | || || ||||| || ||||| Sbjct 11188189 TTGCCTATCAGGGTCTTCACAAAGATCTGCAT 11188158 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 20963 GAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTC 21022 ||| |||| |||| |||||||| || || ||||| || | || || || | || Sbjct 35411312 GAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATTAAAGAGAGTGCGGCCATC 35411253 Query 21023 CTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTC 21082 |||||||| ||||| ||| | || |||| ||||||||| ||| | ||| || || || Sbjct 35411252 TTCCAGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTTATC 35411193 Query 21083 GGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGT 21142 |||||| || || | | | || |||| ||||||| | || ||| ||||| Sbjct 35411192 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTTCAGGGTGATGGT 35411133 Query 21143 CTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 |||||| || | || || | || |||||||||||| Sbjct 35411132 CTTGCCAGTCAGGGTCTTCATGAAGATTTGCATTTTG 35411096 >seq2 Length=98408828 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 20979 GTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCC 21038 |||||||| || || ||||| ||||| | |||||| || | || |||||||||||||| Sbjct 12204386 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCT 12204327 Query 21039 GCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCGGCGATCTTTTGTTTC 21098 ||| | || || ||||||||||| ||| | || |||||||| ||||||| || Sbjct 12204326 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTTGCCTTG 12204267 Query 21099 ACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTCTTGCCGGTTAACGTT 21158 || | ||| || |||| |||||| |||| ||| ||||||||||| || | || Sbjct 12204266 ACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 12204207 Query 21159 TTGACAAATATTTGCATT 21176 || ||||| || |||||| Sbjct 12204206 TTCACAAAGATCTGCATT 12204189 >seq40 Length=10521589 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 20964 AGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGGGCGTCC 21023 |||| || |||||||||||||| || || ||||| ||||| | | |||| | ||| Sbjct 9790147 AGCATCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCGGACGGGGTCCCTCCATCC 9790088 Query 21024 TCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCCTTGTCG 21083 ||||||| ||||| ||| | || || ||||| ||||| || | |||||||||||| Sbjct 9790087 TCCAGCTACTTGCCGGCAAATATCAGCCTCTGATGGTCGGGTGGGATGCCTTCCTTGTCT 9790028 Query 21084 GCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTTTCCACGGTAATGGTC 21143 |||||| || || | ||| || |||| |||||| || | || |||||| Sbjct 9790027 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTC 9789968 Query 21144 TTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 ||||| || | || || ||||| || ||||| ||| Sbjct 9789967 TTGCCTGTCAGGGTCTTCACAAAGATCTGCATGTTG 9789932 >seq38 Length=14253900 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 20958 AGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCCAGGGTTTGG 21017 || || ||||||| ||| | |||||||||||||| ||||| ||||| | || || || Sbjct 298692 AGTCTCAGCACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGG 298751 Query 21018 GCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGCACGCCTTCC 21077 | || |||||||| ||||| ||| | || || |||||||| || || | |||||| Sbjct 298752 CCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCC 298811 Query 21078 TTGTCGGCGATCTT 21091 || || |||||| Sbjct 298812 TTATCCTGGATCTT 298825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422226598290860