Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq26 196 3e-45 seq8 105 5e-18 seq22 91.5 1e-13 >seq26 Length=66536344 Score = 196 bits (216), Expect = 3e-45 Identities = 466/702 (66%), Gaps = 2/702 (0%) Strand=Plus/Plus Query 96967 AAATCATCAATAGATGCAATCTTTCTGGCAAACTTTAGTGTTGGGAAAGGCCTGGGAGTT 97026 ||||||||||| | ||| |||| || || || |||||||||| || || | Sbjct 25929441 AAATCATCAATTGTCTCAACTTTTCGAAGAATTTTGAGCTTTGGGAAAGGTCTTGGCTCT 25929500 Query 97027 CGCGTAAGCTGCTCTGTGAGAGCATCAATGTGATTCACATAAATGTGAGCATCTCCTAAA 97086 ||| |||||| | | || | || || ||||||| ||||| || |||||||| || Sbjct 25929501 CGCTGAAGCTGAATTTTCAGGGGCTCGATATGATTCAGGTAAATATGTGCATCTCCCAAG 25929560 Query 97087 GTGTGAATAAATTCTCCAGGAACTAAATCAGTGACATGGGCGATCATACAAGTTAATAGA 97146 ||||| | ||| || || || || | ||| || || ||||| | || | || Sbjct 25929561 GTGTGGACAAAATCCCCTGGCTTTAGGCCTGTGGTGTGTGCAATCATGTAGGTAAGCAGG 25929620 Query 97147 GAATAGCTAGCAATGTTAAAAGGCACCCCTAGTCCCATATCAGCTGATCTTTGATATAAC 97206 | |||||| |||||||| || ||||| || || |||||||| | || || || || | | Sbjct 25929621 GCATAGCTGGCAATGTTGAAGGGCACACCCAGGCCCATATCTCCCGACCTCTGGTAGAGC 25929680 Query 97207 TGACAGGAAAGCTTTCCATCACACACATAAAACTGACTCAATACATGACAGGGGGGCAAC 97266 || || || |||| |||| ||||| || |||| | |||| || || |||| Sbjct 25929681 TGGCAAGACAGCTCCCCATTCGCTACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGT 25929740 Query 97267 GCCATTTTTGGAACATCTAAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGG 97326 ||||| |||| |||| ||||| |||||||| | |||||||| || ||| Sbjct 25929741 GCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACATGATGATTCTTCTGTCATCAGGG 25929800 Query 97327 TTTGTGTGTATGGTATTAATTATCTGCTTTAATTGATCAACGCCTTCTCCACCATAATTG 97386 | || | ||||| | ||| | | | | || || || |||| || | | | | Sbjct 25929801 CTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTCTACTCCTTGACC-CGAGTAATC 25929859 Query 97387 TGCTT-AAGACCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCC 97445 || || | | ||| || ||||| |||||||| ||||| ||||| |||||||| || || Sbjct 25929860 TGATTCCATATCTTTGTAGTCTGCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCC 25929919 Query 97446 AAGGTCTCCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATT 97505 || || ||||| | || || |||| || || | || | | | | || ||||| Sbjct 25929920 CAGATCCCCTTCCTGTCGTGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATT 25929979 Query 97506 TGCATCCCAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGAT 97565 |||||||| || ||| || | | || ||||| | || ||||| |||| Sbjct 25929980 GGCATCCCAGATTCTCACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGGATCCCTTGAT 25930039 Query 97566 AAACCACAACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGG 97625 |||||||| |||||| |||| ||| || |||| || |||| || ||||| | ||||| Sbjct 25930040 AAACCACAGCAATTCCTCCAAAACGCCCTTCCAGAACACTCGTTTGGTTGTGAGCAGAGG 25930099 Query 97626 AAAATCCTTTTCTAAGCTGTATCTAGACTGCATTCCAAAAAC 97667 ||| || | | | | ||||||| |||||| || || || Sbjct 25930100 AAATTCATCTCTCAGGTTGTATCTCACCTGCATGCCGAACAC 25930141 >seq8 Length=88571779 Score = 105 bits (116), Expect = 5e-18 Identities = 183/266 (69%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 || ||||| |||||||| ||||| ||||| |||||||| || || || || ||||| | | Sbjct 15948552 TAGTCTGCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGATCCCCTTCCTGT 15948611 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGC 97521 | || |||| || || | || | | | | || ||||| |||||||| || | Sbjct 15948612 CGTGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTC 15948671 Query 97522 ACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCT 97581 || || | | || ||||| | || ||||| |||||||||||| |||||| Sbjct 15948672 ACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGGATCCCTTGATAAACCACAGCAATTCC 15948731 Query 97582 TCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAATCCTTTTCTAAG 97641 |||| ||| || |||| || |||| || ||||| | |||||||| || | | | | Sbjct 15948732 TCCAAAACGCCCTTCCAGAACACTCGTTTGGTTGTGAGCAGAGGAAATTCATCTCTCAGG 15948791 Query 97642 CTGTATCTAGACTGCATTCCAAAAAC 97667 ||||||| |||||| || || || Sbjct 15948792 TTGTATCTCACCTGCATGCCGAACAC 15948817 >seq22 Length=61813736 Score = 91.5 bits (100), Expect = 1e-13 Identities = 180/264 (68%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 97402 TATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCTTCTTCT 97461 || ||||||| |||||| ||||| ||||| |||||||| || || ||||| ||||| | | Sbjct 17833929 TAGTCTGCTCAAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCTGT 17833988 Query 97462 CTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAAATGTGC 97521 | || |||| || | | || | | | | || ||||| |||||||| || | Sbjct 17833989 CGTGCAGAGAATCCCATGCTGTCCAGAAAAACTCGGGACCCATTGGCATCCCAGATTCTC 17834048 Query 97522 ACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAACAATTCT 97581 || || | | || ||||| | || ||||| |||||||||||| ||| || Sbjct 17834049 ACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGCATCCTTTGATAAACCACAGCAACTCC 17834108 Query 97582 TCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAAATCCTTTTCT-AA 97640 | || |||||| || | || |||| || ||||| | ||| |||||| | | ||| | Sbjct 17834109 TTCAAAACACCCTTCTAGAACACTCGTTTGGTTGTGAGCAGA-GAAAATTCATCTCTCAG 17834167 Query 97641 GCTGTATCTAGACTGCATTCCAAA 97664 | ||||| | |||||| || || Sbjct 17834168 GTTGTATGGTGCCTGCATGCCTAA 17834191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346757225565950