Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq33 118 9e-22 seq7 116 3e-21 seq2 116 3e-21 seq17 114 1e-20 seq38 105 6e-18 seq9 100 2e-16 seq16 86.0 5e-12 >seq33 Length=41749222 Score = 118 bits (130), Expect = 9e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | |||||||||||| || | || ||||| ||||| |||||||| || Sbjct 34672175 ACCACCACGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 34672234 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || ||||| || |||||| |||| || | ||||||||| ||||| Sbjct 34672235 CAAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGG 34672294 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | ||||||| | || || Sbjct 34672295 AATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAAC 34672354 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | ||||| || || || || || || ||||||||||| Sbjct 34672355 CTCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACGAAAATCTGCAT 34672402 >seq7 Length=85103860 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| ||| | || |||||||| || |||||||| ||| || |||| ||| || Sbjct 11188366 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCAGCCATCTTCC 11188307 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||| ||| || || |||| || | |||||| || || || |||||||||||||| Sbjct 11188306 AGCTCTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 11188247 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || ||| || || | |||| |||||| || ||||||||||| ||| | || ||| Sbjct 11188246 ATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTG 11188187 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || ||||| |||||||| Sbjct 11188186 CCTATCAGGGTCTTCACAAAGATCTGCAT 11188158 >seq2 Length=98408828 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || |||||||| || |||||||| ||| || ||||| ||| || |||||||| || Sbjct 12204386 GTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCT 12204327 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| || | |||||| || || || || ||||||||||| || ||| || Sbjct 12204326 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTTGCCTTG 12204267 Query 118662 ACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTT 118721 || | |||| |||||| || ||||||||| | ||| | || ||||| ||||| || Sbjct 12204266 ACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTC 12204207 Query 118722 TTTACAAAAATCTGCAT 118738 || ||||| |||||||| Sbjct 12204206 TTCACAAAGATCTGCAT 12204190 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | |||||||||||| | | || ||||| ||||| |||||||| || Sbjct 61256680 ACCACCACGAAGTCTCAACACCAAACGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 61256621 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || ||||| || |||||| |||| || | ||||||||| ||||| Sbjct 61256620 CAAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGG 61256561 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || || || | ||| | ||||||| | || || Sbjct 61256560 AATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAAC 61256501 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | ||||| || || || || || | ||||||||||| Sbjct 61256500 CTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCATGAAAATCTGCAT 61256453 >seq17 Length=65020687 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | |||||||||||| || | | ||||| ||||| |||||||| || Sbjct 35302157 ACCACCACGAAGTCTCAACACCAAATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGA 35302216 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || ||||| || ||||| |||| || | ||||||||| ||||| Sbjct 35302217 CAAAGTACGGTCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 35302276 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| || || || ||| || | ||| | ||||||| | || || Sbjct 35302277 AATTCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATAGTGTCCGAGAGTTCAAC 35302336 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | ||||| || || || || || || ||||||||||| Sbjct 35302337 CTCGAGCGTGATGGTTTTTCCTGTAAGGGTCTTCACGAAAATCTGCAT 35302384 >seq38 Length=14253900 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 118523 TCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT 118582 ||||| |||||| || | || ||||| ||||| |||||||| || || ||| || Sbjct 298694 TCTCAGCACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCC 298753 Query 118583 ATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTT 118642 ||| || ||||| || ||||| |||| || | ||||||||| ||||| || || ||||| Sbjct 298754 ATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTT 298813 Query 118643 GTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCAC 118702 || || || || || | ||| | ||||||| | || ||||||| || | Sbjct 298814 ATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAACGTGAT 298873 Query 118703 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || | || || ||||| ||||||||||| Sbjct 298874 GGTTTTCCCCTTAAGGGTCTTTACGAAAATCTGCAT 298909 >seq9 Length=86001432 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | |||||||||||| || | || ||||| ||||| |||||||| || Sbjct 39797618 ACCACCACGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 39797559 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || ||| || ||||| || ||||| |||| || | ||||||||| ||||| Sbjct 39797558 CAAAGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGG 39797499 Query 118631 TATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGAC 118690 || || ||||| | || || || || | ||| | ||||||| | || || Sbjct 39797498 AATTCCTTCCTTACCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAAC 39797439 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| | | ||||| || | || || || || ||||||||||| Sbjct 39797438 CTCGAGCGGGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 39797391 >seq16 Length=69618829 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 118511 ACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCT 118570 ||| || || | ||||||||||| | | || ||||| ||||| |||||||| || Sbjct 24326389 ACCACCACGAAGTCTCAACACCAGATAAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGA 24326448 Query 118571 CATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGG 118630 || ||| || |||| || | ||| || |||||| |||| || | ||||||||| ||||| Sbjct 24326449 CAAAGTACGGCTATCTTCCAACTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGG 24326508 Query 118631 TATGCCCTCCTTGTC 118645 || || ||||| || Sbjct 24326509 AATTCCTTCCTTATC 24326523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433796904903820