Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq7 123 2e-23 seq2 123 2e-23 seq40 104 2e-17 seq33 91.5 1e-13 seq17 84.2 1e-11 >seq7 Length=85103860 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | || |||||||| ||||||||||||||||| ||| | || Sbjct 11188142 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATC 11188083 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| ||| |||||||| || || |||| ||||||||| ||| | || |||||||| Sbjct 11188082 TTCCAGCTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 11188023 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 |||||| ||| | || | || | || | | ||||| |||| |||||||| Sbjct 11188022 CTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGT 11187963 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | |||||||||||||||||||| Sbjct 11187962 CTTACCAGTTAAGGTTTTCACAAAGATCTGCAT 11187930 Score = 116 bits (128), Expect = 2e-21 Identities = 154/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34177 CAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTC 34236 ||| |||||||| | || |||||||| ||||||||||||||||| | | | || Sbjct 11188370 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCAGCCATC 11188311 Query 34237 GTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTC 34296 |||| || |||||||| || || |||| ||||||||| ||| | || ||||||||| Sbjct 11188310 TTCCAGCTCTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTC 11188251 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 |||||| ||| | || | || | || | | ||||| || | |||||||| Sbjct 11188250 CTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGT 11188191 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 ||||| | || || |||||||||||||||||| Sbjct 11188190 CTTGCCTATCAGGGTCTTCACAAAGATCTGCATC 11188157 >seq2 Length=98408828 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| ||||||||||||||||| ||| | || |||| ||| |||||||| || Sbjct 12204380 TCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTGCCTGCAAAG 12204321 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| ||||||||| ||| | | ||||||||| |||||| ||| | || Sbjct 12204320 ATCAGCCTCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTTGCCTTGACATTC 12204261 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | | ||||| |||| |||||||| ||||| || || || |||||| Sbjct 12204260 TCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACA 12204201 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 12204200 AAGATCTGCAT 12204190 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || ||||||||||| |||| |||| | || |||| ||||||||| ||||| Sbjct 61256643 TCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAG 61256584 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || |||| |||||| || || | | ||||| || ||||| ||| | || Sbjct 61256583 ATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTT 61256524 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 |||| | || | | ||| || || | |||||||||||| || || || || |||| Sbjct 61256523 TCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTTTTCCCCGTAAGGGTCTTCATG 61256464 Query 34379 AAGATCTGCATC 34390 || ||||||||| Sbjct 61256463 AAAATCTGCATC 61256452 >seq40 Length=10521589 Score = 104 bits (114), Expect = 2e-17 Identities = 150/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 |||| |||||| ||||| |||||||| ||||||||||||||| | | | || Sbjct 9790147 AGCATCAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCGGACGGGGTCCCTCCATCC 9790088 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| || |||||| || || || |||| ||| |||||| || | || |||||||| Sbjct 9790087 TCCAGCTACTTGCCGGCAAATATCAGCCTCTGATGGTCGGGTGGGATGCCTTCCTTGTCT 9790028 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | || | | ||||| || | |||||||| Sbjct 9790027 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTC 9789968 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || ||||||||||||||||| Sbjct 9789967 TTGCCTGTCAGGGTCTTCACAAAGATCTGCAT 9789936 >seq33 Length=41749222 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || |||| ||||| || | || || || || ||||||||||| ||| Sbjct 34672176 CCACCACGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 34672235 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | |||| | || |||| ||||||||| ||||| || |||| |||||| || || Sbjct 34672236 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGA 34672295 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||| || ||||| ||| | || |||| | || | | ||| || Sbjct 34672296 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACC 34672355 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||||||| || || || || ||||| || ||||||||| Sbjct 34672356 TCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACGAAAATCTGCATC 34672403 >seq17 Length=65020687 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || ||||||||||| |||| |||||| || |||| ||||||||| || || Sbjct 35302194 TCCTTTTGGATGTTGTAGTCAGACAAAGTACGGTCATCTTCCAGCTGCTTGCCAGCAAAG 35302253 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 || |||| |||||| || || | | ||||| || ||| || ||||| | || Sbjct 35302254 ATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATC-TTGGCTTTGACATT 35302312 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 |||| | || | ||| || || | |||||||||||| || || || || ||||| Sbjct 35302313 TTCTATAGTGTCCGAGAGTTCAACCTCGAGCGTGATGGTTTTTCCTGTAAGGGTCTTCAC 35302372 Query 34378 AAAGATCTGCATC 34390 || ||||||||| Sbjct 35302373 GAAAATCTGCATC 35302385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323047056317600