Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq4 262 4e-65 seq26 208 7e-49 seq42 165 8e-36 seq9 152 5e-32 seq61 86.0 6e-12 seq100 82.4 7e-11 >seq4 Length=96435083 Score = 262 bits (290), Expect = 4e-65 Identities = 602/901 (67%), Gaps = 18/901 (2%) Strand=Plus/Plus Query 15925 ATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTT 15984 ||||||||| || ||| | ||||| || | |||| ||| |||||||| ||||| || Sbjct 65463892 ATTTGACATCACCCCCATCCTCTGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTT 65463951 Query 15985 TCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTT-----TTTGAACAATAGTAT 16039 |||||||| ||||||||||||||| || ||||| |||||| |||||| ||| Sbjct 65463952 TCCTTCTAGTGAAATATTTTCCATGAAGTCAAATGGATTTTCTACTTTGAA-AAT----C 65464006 Query 16040 TTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATT 16099 || | | || | |||| || | || |||||||| ||||| || ||||| ||||| Sbjct 65464007 TTGCTGAACCCTAGCTCCAGCATAAGCCTGTCCGCCACGAATTCGATGTACTGCTTCATC 65464066 Query 16100 AAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCT 16159 | | |||||||| || || | || ||||| | || || || | ||| | | ||| Sbjct 65464067 AGGGCGCAGTTCATCCCGATGAGCTTCACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCT 65464126 Query 16160 ATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGG---GTTTAAT 16216 | | || || | || || || ||| |||| || | ||| || || || Sbjct 65464127 AGCCTCACTGCGTTGATAATGATTTCTTGTACT---CTTTGCTCCGGCGGCTTGTGTACC 65464183 Query 16217 AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 | ||| | ||||| | || ||||| ||| || || || || || || || || | | Sbjct 65464184 AGGTGCCTGAACATCAGGCAGGCAAAGCAACAGTGTAAACCCTCATCTCTGCTAATAAGC 65464243 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 ||||| ||||| ||||| || ||||| ||||| ||||| || | ||| ||||| | || Sbjct 65464244 TCGTTGGAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGACACA 65464303 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396 || || ||||| |||| || ||||| || || ||||| || || | ||| || || || Sbjct 65464304 AAGGAGCCAGAGAAGAGGATCCCTTCCACAGCAGCAAAGGCCACAACTCGTTCTCCATAG 65464363 Query 16397 GT-TCTAtttttactttctatccattttttagcccaatttgctttttgtttAACACAGTT 16455 || || ||| | | ||||| ||||| | || || | ||| ||||| Sbjct 65464364 GTAGCTTCTTTGTCCCCCAATCCAACGCAGGGCCCAGTCGGCCTTCTTTTTCACACAAGG 65464423 Query 16456 CATGTTCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATC 16515 ||| |||| || ||||| || | ||| | | |||||| |||| ||| |||||||| Sbjct 65464424 CATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAATCTTTAATGTAAGTATC 65464483 Query 16516 TATTAGTAAACTATACATTTCTGAATG-AATATTCTCCATTGCTATCTGAAAACCATAAA 16574 || || | ||| |||||||| ||||| || || ||||| || || || || ||||| | Sbjct 65464484 GATGAGGAGACTGTACATTTCAGAATGTTATGTTTTCCATGGCAATTTGGAAGCCATAGA 65464543 Query 16575 AGCATCTAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAA 16634 | || | || || | | || ||||| | || | || | | |||||| || | Sbjct 65464544 AACAGCGGGCCTCTGTAACCTGAACTTCTTGGCTGAAGCGCTCCACCAGGTTTTCATTGA 65464603 Query 16635 CTATTCCATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTAT 16694 |||| ||||| || || ||||| || || || | ||| ||||||| | | |||| Sbjct 65464604 CTATGCCATCACTCGCAGCAAAGAAAGCCAGGACGTGAGATATAAAATGTCTCTCGTCGG 65464663 Query 16695 CTGAAAGTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAA 16754 | || | ||||| || ||| || || | |||||||| || | ||||| | Sbjct 65464664 GTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCGACCTCCTCAGCCGTCCAGA 65464723 Query 16755 AAGAAGCAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAA 16814 | ||||| | || || || ||||| | ||| || || | ||| | || ||||| || | Sbjct 65464724 AGGAAGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTATTCGATGGGAAAGACCA 65464783 Query 16815 C 16815 | Sbjct 65464784 C 65464784 >seq26 Length=66536344 Score = 208 bits (230), Expect = 7e-49 Identities = 587/895 (66%), Gaps = 11/895 (1%) Strand=Plus/Plus Query 15925 ATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTT 15984 |||||| || || ||| | ||||| |||| |||| ||| |||| ||| ||||| || Sbjct 31519107 ATTTGAAATCACCTCCATCCTCTGATACTCACCCACTCGCTTCTCAAGGAAGTTTGTCTT 31519166 Query 15985 TCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATC 16044 ||||||| |||||||||||||| || ||||||||||||| | || | | | | | Sbjct 31519167 CCCTTCTAGTGAAATATTTTCCACGAAGTCAAAAGGATTTTCT--ACTTTGGAAATCTTG 31519224 Query 16045 --GCATCCCAATTCCAACAATAATC-TATCCGCCACAAATTCTATATACTGTTTCATTAA 16101 | | || | |||| || ||| | | || ||||| ||||| || ||| | ||||| | Sbjct 31519225 CTGAACCCTAGCTCCAGCA-TAAGCGTGTCGGCCACGAATTCGATGTACCGCTTCATGAG 31519283 Query 16102 ATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTAT 16161 |||||||| | || | || ||||| | || || || | ||| | | ||| Sbjct 31519284 GGTGCAGTTCATCCTGATGAGCTTCACAGGCAGGGCCTCCGTGAGAAACACCTGCTTTAT 31519343 Query 16162 ATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTG 16221 | || || | || || || ||| |||| | | ||| | ||| | ||| Sbjct 31519344 CCTCACTGCGTTGATAATGATTTCTTGTACTCTTTGCTCTGGCGGCTTGCTTACCAGGTG 31519403 Query 16222 TTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTT 16281 | ||||| | || ||||| |||| || || | || || || || || | ||| || Sbjct 31519404 CCTGAACATCAGGCAGGCAAAGCCACAGTGTAAACGCTCATCTCTGCTAATAAGCTCTTT 31519463 Query 16282 TGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGA 16341 ||||||||||| || ||||| ||||| |||| || | ||| ||||| | ||||| || Sbjct 31519464 GGAAAATGTAAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAGAATATTGACGCAAAAGA 31519523 Query 16342 ACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCT 16401 ||||| ||||| || |||| || || ||||| || || | || || || || || | Sbjct 31519524 GCCAGAGAAGAAGATGTCTTCTACAGCAGCAAAGGCCACAACTCTTTCTCCATAGGTAGT 31519583 Query 16402 Attttt-actttctatccattttttagcccaatttgctttttgtttAACACAGTTCATGT 16460 ||||| || ||||| ||||| | || | | ||| ||||| ||| Sbjct 31519584 CTTTTTGTCTCCAAATCCAACGCAGGGCCCAGTCAGCCTACTTTTTCACACAAGGCATTG 31519643 Query 16461 TCTCTATTGCATTAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTA 16520 |||| || ||||| || | ||| | | |||||| |||| ||| || || || | Sbjct 31519644 TCTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAATCTTTAAT----GTGTCAATGA 31519699 Query 16521 GTAAACTATACATTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATC 16580 | | ||| |||||||| ||||| | || ||||| || || || || ||||| || || | Sbjct 31519700 GGAGACTGTACATTTCAGAATGTTTGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGC 31519759 Query 16581 TAGCTTCGGATATTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTC 16640 || || | | || ||||| | ||| | || | | |||||| || ||||| | Sbjct 31519760 GGGCCTCTGTAACCTGAACTTCTTGGCTAAAGCGCTCCACCAGGTTTTCATTGACTATGC 31519819 Query 16641 CATCGCTAGCTGCAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTGAAA 16700 |||| || |||||||| || || || | ||| ||||||| | | |||| | | | Sbjct 31519820 CATCACTGGCTGCAAAGAAAGCCAGGACGTGAGATATAAAATGTCTCTCGTCAGGTTTCA 31519879 Query 16701 GTTTTAACCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAG 16760 | | | ||| || ||| || || | || ||||| || | ||||| || | | Sbjct 31519880 GCGCTTCCTAGTGTTGAATATCCTTGGAGAGGTCCACCTCGTCAGCTGTCCAGAAGAAGG 31519939 Query 16761 CAACAGCCTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAACACAAC 16815 | | || || || ||||| | ||| || || | ||| |||| ||||| ||||| Sbjct 31519940 CCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTATTCAATGGGAAAGACAAC 31519994 >seq42 Length=9663327 Score = 165 bits (182), Expect = 8e-36 Identities = 324/476 (68%), Gaps = 16/476 (3%) Strand=Plus/Minus Query 15925 ATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTT 15984 ||||||||| || ||| | ||||| | | || | ||| |||||||| ||||| || Sbjct 3436107 ATTTGACATCACCCCCATCCTCTGATACTTGCCCACGCGCTTCTCAAAGAAGTTTGTCTT 3436048 Query 15985 TCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTT-----TTTGAACAATAGTAT 16039 ||||||| ||||||||||||||| | ||||| |||||| |||||| ||| Sbjct 3436047 CCCTTCTAGTGAAATATTTTCCATGGAGTCAAACGGATTTTCTACTTTGAA-AAT----C 3435993 Query 16040 TTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATT 16099 || | |||| | |||| || | || |||||||| ||||| || || || ||||| Sbjct 3435992 TTGCTGAATCCTAGCTCCAGCATAAGCCTGTCCGCCACGAATTCGATGTAGTGCTTCATC 3435933 Query 16100 AAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCT 16159 | ||| | || || || | || ||||| | || || || | ||| | | ||| Sbjct 3435932 AGGGTGCAGCTTATCCCGATGAGCTTCACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCT 3435873 Query 16160 ATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGG---GTTTAAT 16216 || | | || | || || || ||| |||| || | ||| || || || Sbjct 3435872 ATCCTCAAGGCGTTGATAATGATTTCTTGTACT---CTTTGCTCCGGCGGCTTGTGTACC 3435816 Query 16217 AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 | ||| | ||||| | || ||||| ||||| || || || || || || || || | | Sbjct 3435815 AGGTGCCTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGC 3435756 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 ||||| ||||| ||||| || ||||| ||||| ||||| || | ||| ||||| | ||| Sbjct 3435755 TCGTTGGAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGACGCA 3435696 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACC 16392 || || ||||| ||||| || ||||| || || ||||| || || | ||| || || Sbjct 3435695 AAAGAGCCAGAGAAGAAGATCCCTTCCACAGCAGCAAAGGCCACAACTCGTTCTCC 3435640 Score = 93.3 bits (102), Expect = 4e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 15925 ATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTT 15984 ||||||||| || ||| | ||||| || | |||| ||| |||||||| ||||| || Sbjct 3438602 ATTTGACATCACCCCCATCCTCTGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTT 3438543 Query 15985 TCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTTT 16025 ||||||| ||||||||||||||| || ||||| ||||||| Sbjct 3438542 CCCTTCTAGTGAAATATTTTCCATGAAGTCAAACGGATTTT 3438502 >seq9 Length=86001432 Score = 152 bits (168), Expect = 5e-32 Identities = 325/482 (67%), Gaps = 19/482 (4%) Strand=Plus/Plus Query 15925 ATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTT 15984 ||||||||| || ||| | ||||| | | || | ||| |||||||| ||||| || Sbjct 36369737 ATTTGACATCACCCCCATCCTCTGATACTTGCCCACGCGCTTCTCAAAGAAGTTTGTCTT 36369796 Query 15985 TCCTTCTAATGAAATATTTTCCATAAAATCAAAAGGATTT-----TTTGAACAATAGTAT 16039 ||||||| ||||||||||||||| | ||||| |||||| |||||| ||| Sbjct 36369797 CCCTTCTAGTGAAATATTTTCCATGGAGTCAAACGGATTTTCTACTTTGAA-AAT----C 36369851 Query 16040 TTATCGCATCCCAATTCCAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATT 16099 || | |||| | |||| || | || |||||||| ||||| || || || ||||| Sbjct 36369852 TTGCTGAATCCTAGCTCCAGCATAAGCCTGTCCGCCACGAATTCGATGTAGTGCTTCATC 36369911 Query 16100 AAATCACAGTTCATTCCTATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCT 16159 | ||| | || || || | || ||||| | || || || | ||| | | ||| Sbjct 36369912 AGGGTGCAGCTTATCCCGATGAGCTTCACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCT 36369971 Query 16160 ATATTAACCGCTTCAATGATTATATCTCTTACTACACTATTTAACGGAGG---GTTTAAT 16216 || | || || | ||||| || ||| |||| || | ||| || || || Sbjct 36369972 ATCCTCACTGCGTTGATGATGATTTCTTGTACT---CTTTGCTCCGGCGGCTTGTGTACC 36370028 Query 16217 AAGTGTTTAAACATTATACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAAC 16276 | ||| | ||||| | || ||||| ||||| || || || || || || || || | | Sbjct 36370029 AGGTGCCTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGC 36370088 Query 16277 TCGTTTGAAAATGTAAGACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCA 16336 ||||| ||||| ||||| || ||||| ||||| |||| | | ||| ||||| | ||| Sbjct 36370089 TCGTTGGAAAACGTAAGGCCAGGCATCAGTCCCAGTTTCCTGAGCCAGAATATTGACGCA 36370148 Query 16337 AATGAACCAGAAAAGAATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTAC 16396 || || |||| |||| || ||||| | || ||||| || || | ||| || || || Sbjct 36370149 AAAGAGCCAG---AGAAGATCCCTTCCATAGCAGCAAAGGCCACAACTCGTTCTCCATAG 36370205 Query 16397 GT 16398 || Sbjct 36370206 GT 36370207 >seq61 Length=4506808 Score = 86.0 bits (94), Expect = 6e-12 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 15947 TGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATTTTCC 16006 || || ||| ||||| ||| ||||||||||| ||||| ||||| || || || |||||| Sbjct 592581 TGGTACTCAGAAACTCGCTTCTCAAAGAAATTCGTTTTCCCTTCCAACGAGATGTTTTCC 592522 Query 16007 ATAAAATCAAAAGGATTTTTTG 16028 ||||||||||| ||||||| || Sbjct 592521 ATAAAATCAAAGGGATTTTCTG 592500 >seq100 Length=2073127 Score = 82.4 bits (90), Expect = 7e-11 Identities = 74/93 (80%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 15925 ATTTGACATAACTGACATTTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTT 15984 ||||||||| || ||| | ||||| || | |||| ||| |||||||| ||||| || Sbjct 1380483 ATTTGACATCACCCCCATCCTCTGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTT 1380542 Query 15985 TCCTTCTAATGAAATATTTTCCATAAAATCAAA 16017 ||||||| ||||||||||||||| || ||||| Sbjct 1380543 CCCTTCTAGTGAAATATTTTCCATGAAGTCAAA 1380575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462475374831000