Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_002665.1 Length=108873 Score E Sequences producing significant alignments: (Bits) Value seq4 1151 0.0 seq14 118 7e-22 seq8 114 9e-21 >seq4 Length=96435083 Score = 1151 bits (1276), Expect = 0.0 Identities = 1041/1306 (80%), Gaps = 10/1306 (1%) Strand=Plus/Plus Query 107336 GAAGCTTTGCCGGGGACATCATCTGTGGGCCCTGGGCTGCTATATGCTGCTGGCCGTTGT 107395 |||||| || || | ||||| ||||| ||||||||||||| |||||||||||| | | Sbjct 69447667 GAAGCTCTGTTGGCGCTATCATGTGTGGACCCTGGGCTGCTACATGCTGCTGGCCATCAT 69447726 Query 107396 TTCTCTGAGACTTTCCCTCAGGTTTAAATGTGATGTAGATTCCTTGGATCTGGAGTCCAG 107455 | |||||| ||| |||||||| | || ||||| | ||| | ||||||| | || | Sbjct 69447727 TGCTCTGAAACTGTCCCTCAGACTGAAGTGTGACTTTGATGTCGTGGATCTTAACTCGAA 69447786 Query 107456 GGACTTCCAGAGTCAGCACTGTAGGGACATGTTGTACAATAGCCTGAAGCTGCCAGCAAA 107515 ||| || || || |||||||| |||||| | ||||||| | |||||||||||||||||| Sbjct 69447787 GGAATTTCAAAGCCAGCACTGCAGGGACTTCCTGTACAAGACCCTGAAGCTGCCAGCAAA 69447846 Query 107516 GAGATCCATCAACTGTTCTGGGATCACGCGAGGGGACCAGGAAGCAGTGGTCCAGGCCCT 107575 ||| |||||||||||||| ||| |||| |||||||| ||| |||||||| ||||||| | Sbjct 69447847 GAGGTCCATCAACTGTTCCGGGGTCACTCGAGGGGAGCAGAAAGCAGTGATCCAGGCTTT 69447906 Query 107576 CCTAGACAACCTGGAAGTGAAGAAAAAGCGGTCGCCTCTCACTGGCACCTATTACCTCAA 107635 || | |||||||| | ||||| |||||| ||| |||| | || | ||||| | Sbjct 69447907 GCTGAATAACCTGGAGATTAAGAAGAAGCGGCAGCCCTTCACAGAGGCCGACTACCTTAG 69447966 Query 107636 CATAACCAGAGACTGTGAGCGCTTCAAGGCCCAAAGGAAGTTCATACAGTTCCCACTGAG 107695 ||| || ||||||||||| |||||| || ||||||| |||||||||||| | ||||| Sbjct 69447967 CATGACAGCAGACTGTGAGCAATTCAAGACCAAAAGGAAATTCATACAGTTCTCGCTGAG 69448026 Query 107696 TAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGATTGAAAA 107755 |||||||||| ||||||||||| || || || |||||||| ||||||||||| || || Sbjct 69448027 TAAAGAAGAGGCCGACTTCCCCATCGCGTATTCCATGGTGGTTCATGAGAAGATCGAGAA 69448086 Query 107756 CTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGA 107815 ||||||| |||||||||| || ||||| ||||||| ||||||||||||||||||||||| Sbjct 69448087 CTTTGAAAGGCTGCTGCGCGCGGTGTACACCCCTCAAAACATATACTGTGTCCACGTGGA 69448146 Query 107816 TGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGCTTCCCCAA 107875 | |||||||||||| |||||||| |||| ||| ||||||| | || |||||||| || Sbjct 69448147 TCAGAAGTCCCCAGAAACTTTCAAGCAGGCAGTCGGGGCCATTGTGTCATGCTTCCCAAA 69448206 Query 107876 TGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGC 107935 |||||| || || |||||| |||| | ||||| ||||| ||||||||||| ||||| || Sbjct 69448207 TGTCTTTATAGCTAGTAAGCTGGTGTCAGTGGTCTATGCTTCCTGGTCCAGGGTGCAGGC 69448266 Query 107936 TGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAA 107995 |||||||||||| ||||||||||| |||||||||| ||||||||||| ||| | ||||| Sbjct 69448267 TGACCTGAACTGCATGGAAGACTTAGTCCAGAGCTCTGTGCCATGGAAATACCTCCTGAA 69448326 Query 107996 TACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTCCTGGCCCTCAAGAT 108055 || || ||||||||||| ||||| ||||||||||| || ||||||| |||||||||| | Sbjct 69448327 CACCTGTGGGACAGACTTTCCCATCAAGACCAATGCTGAAATGGTCCAGGCCCTCAAGCT 69448386 Query 108056 GTTGAAGGGTAAGAACAGTATGGAGTCTGAGGTACCTTCTGAGTCCaaaaaaaa----TC 108111 ||||| || |||||||||||||||| |||||||| | ||| | |||| || Sbjct 69448387 ATTGAATGGGCAGAACAGTATGGAGTCAGAGGTACCACC----CCCACATAAAAGGTTTC 69448442 Query 108112 GCTGGAAATACCGCTATGAGGTGACAGACACACTGTACCCTACCAGCAAGATGAAGGACC 108171 ||||| |||| | ||||||||| | ||||||| ||||| |||| |||||| ||| || Sbjct 69448443 GCTGGGAATATCACTATGAGGTAAAAGACACATTGTACAATACCGGCAAGAGAAAGACCC 69448502 Query 108172 CTCCCCCTGATAATTTACCCATGTTCACAGGGAATGCCTATTTTGTGGCCTCTCGAGCCT 108231 |||| ||| |||| || ||||||| || ||||||||||| | ||||| ||||||| || Sbjct 69448503 CTCCGCCTTATAACATAACCATGTTTACTGGGAATGCCTACATGGTGGCTTCTCGAGACT 69448562 Query 108232 TTGTCCAACATGTCTTAGACAACCCTAAATCCCAAAGACTGGTTGAATGGGTCAAAGACA 108291 | | ||||||| ||| |||| | ||| ||||| ||| | ||||||| ||||||| Sbjct 69448563 TCATTGAACATGTATTAACCAACACCAAAGCCCAACAACTAATCGAATGGGCAAAAGACA 69448622 Query 108292 CCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGATGCCTGGCT 108351 |||| || || || || ||||| ||||||||||| |||||||| | ||||||||||| | Sbjct 69448623 CCTACAGTCCTGATGAGCACCTTTGGGCCACCCTCCAGCGTGCCTCTTGGATGCCTGGAT 69448682 Query 108352 CTGTTCCTAGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAGGCTCGTCA 108411 | | ||| |||||||| | | || ||||||| |||| || || || ||||| || Sbjct 69448683 CAGCTCCCTTGCACCCCAAATTTGACCTCTCAGATATGAGAGCTATTGCAAGGCTAACCA 69448742 Query 108412 AGTGGCAGTACCACGAGGGAGATGTC-AGCATGGGGGCGCCTTATGCACCCTGCTCTGGA 108470 | |||||| ||||||||||||| || || || |||||||| || |||| || || ||| Sbjct 69448743 AATGGCAGGACCACGAGGGAGACATCGAGGAT-GGGGCGCCGTACACACCTTGTTCAGGA 69448801 Query 108471 ATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCTCCAGAAC 108530 |||| | | |||| |||| ||||| ||| | ||||||||| ||||||| || |||||| Sbjct 69448802 GTCCACCAGCGGGCTGTCTGTATTTATGGGTCTGGGGACCTGCACTGGATACTTCAGAAC 69448861 Query 108531 CATCACCTCTTGGCAAACAAGTTTGACCCGAGGGTGGATGATAACGTCCTGCAGTGCTTA 108590 |||||||||||||| |||||||||||||| | |||||||||||| || || ||||| ||| Sbjct 69448862 CATCACCTCTTGGCCAACAAGTTTGACCCAAAGGTGGATGATAATGTTCTTCAGTGTTTA 69448921 Query 108591 GAAGAGTACCTACGTCATAAGGCCATCTATGGGACTGAACTTTGAG 108636 || || || ||||||| || |||||||||||||||||||| |||| Sbjct 69448922 GAGGAATATTTACGTCACAAAGCCATCTATGGGACTGAACTGTGAG 69448967 >seq14 Length=62639585 Score = 118 bits (130), Expect = 7e-22 Identities = 187/262 (71%), Gaps = 6/262 (2%) Strand=Plus/Plus Query 107698 AAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAGA-TTGAAAAC 107756 |||||||| | ||||||| | ||||| |||||| |||| | ||| || || || Sbjct 44928332 AAGAAGAGGCTGCCTTCCCCCTGGCCTATGTCATGGTGATCCACAA--AGACTTCAACAC 44928389 Query 107757 -TTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTCCACGTGGA 107815 |||||| |||| | | ||| | || || || ||||| | ||||| || |||||||| Sbjct 44928390 CTTTGAAAGGCTCTTCAGGGCCATTTACGCGCCCCAGAATGTCTACTGCGTGCACGTGGA 44928449 Query 107816 TGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTC-CTGCTTCCCCA 107874 | |||| | |||||||||| ||||| || ||| || | ||| | ||||||||||| Sbjct 44928450 TAAGAAGGCATCAGAGACTTTTAAAGATGCTGTCCAG-CAGTTACTAAGCTGCTTCCCCA 44928508 Query 107875 ATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAG 107934 ||| |||| ||||| |||| | | ||||| ||||| || ||| | | || | Sbjct 44928509 ATGCCTTCCTGGCCTCTAAGACAGAGGCCGTGGTCTATGCTGGCTTCTCCCGGCTCCAGG 44928568 Query 107935 CTGACCTGAACTGTATGGAAGA 107956 | ||||||||||| |||||||| Sbjct 44928569 CAGACCTGAACTGCATGGAAGA 44928590 Score = 109 bits (120), Expect = 4e-19 Identities = 179/253 (71%), Gaps = 14/253 (6%) Strand=Plus/Plus Query 107782 ATGCCCCTCAGAACATATACTGTGTCCACGTGGATGTGAAGTCCCCAGAGACTTTCAAAG 107841 ||||||| |||| | |||||||| ||||||||| |||| | |||||||||| |||| Sbjct 44868654 ATGCCCC--AGAATGTCTACTGTGTGCACGTGGATAAGAAGGCGTCAGAGACTTTTAAAG 44868711 Query 107842 AGGCGGTCAAGGCCATTATTTC-CTGCTTCCCCAATGTCTTCATGGCCAGTAAGTTGGTC 107900 | || ||| || | ||| | |||||||||||||| |||| ||||| |||| | Sbjct 44868712 ATGCCGTCCAG-CAGTTACTAAGCTGCTTCCCCAATGCCTTCCTGGCCTCTAAGACAGAG 44868770 Query 107901 CCGGTGGTTTATGCCTCCTGGTCCAGAGTGCAAGCTGACCTGAACTGTATGGAAGACTTG 107960 | ||||| ||||| || ||| | | || || ||||||||||| |||||||| || Sbjct 44868771 GCCGTGGTCTATGCTGGCTTCTCCCGGCTCCAGGCAGACCTGAACTGCATGGAAGATCTG 44868830 Query 107961 -----CTCCAGAGCTCAGTGCCATGGAAGTACTTACTGAATACATGCGGGACAGACTTCC 108015 ||||| || || || ||||||| | || || || || ||| ||||||| Sbjct 44868831 GTGGCCTCCA-AG----GTCCCGTGGAAGTTTGTCCTCAACACCTGTGGGCAGGACTTCC 44868885 Query 108016 CCATAAAGACCAA 108028 || | || ||||| Sbjct 44868886 CCCTGAAAACCAA 44868898 >seq8 Length=88571779 Score = 114 bits (126), Expect = 9e-21 Identities = 192/274 (70%), Gaps = 8/274 (3%) Strand=Plus/Minus Query 108288 GACACCTATAGCCCCGACGAACACCTCTGGGCCACCCTTCAGCGTGCTCCGTGGA-TGCC 108346 ||||| |||||||| || || |||||||||||||| | || | | ||| || | | || Sbjct 47381760 GACACGTATAGCCCAGATGAGTACCTCTGGGCCACCATCCAAAG-GATCCCTGAAGTCCC 47381702 Query 108347 TGGCTCTGTTCCT---AGCCACCCCAAGTATCACATCTCAGACATGACTGCCATCGCCAG 108403 ||| ||| | || ||||| |||||| || | || ||||||| ||| |||| || Sbjct 47381701 TGGTTCTCTCCCCTCGAGCCAT---AAGTATGACTTGTCCGACATGAATGCTGTCGCTAG 47381645 Query 108404 GCTCGTCAAGTGGCAGTACCACGAGGGAGATGTCAGCATGGGGGCGCCTTATGCACCCTG 108463 | | ||||||||||||||| || || ||||| || || || ||||| |||| || Sbjct 47381644 GTTTGTCAAGTGGCAGTACTTTGAAGGTGATGTTTCCAAAGGCGCTCCTTACCCACCGTG 47381585 Query 108464 CTCTGGAATCCATCGGAGGGCCATCTGCATTTACGGGGCCGGGGACCTGTACTGGATTCT 108523 | ||| ||||| | || | ||||||| ||| || | ||| || |||||| || Sbjct 47381584 CAGCGGAGTCCATGTACGCTCCGTGTGCATTTTCGGAGCTGCTGACTTGAGCTGGATGCT 47381525 Query 108524 CCAGAACCATCACCTCTTGGCAAACAAGTTTGAC 108557 | || || ||| | || || || ||||||||| Sbjct 47381524 TCGCAAACACCACTTTTTCGCCAATAAGTTTGAC 47381491 Score = 114 bits (126), Expect = 9e-21 Identities = 241/356 (68%), Gaps = 4/356 (1%) Strand=Plus/Minus Query 107688 CCACTGAGTAAAGAAGAGCTAGACTTCCCCATTGCCTACTCGATGGTGGTCCATGAGAAG 107747 || || |||||||| ||| |||||| ||||| || ||||| || ||||| ||| | ||| Sbjct 47382363 CCTCTTAGTAAAGAGGAGGCAGACTTTCCCATCGCGTACTCCATAGTGGTTCATCACAAG 47382304 Query 107748 ATTGAAAACTTTGAACGGCTGCTGCGAGCCGTGTATGCCCCTCAGAACATATACTGTGTC 107807 ||||||| |||| |||| ||| | ||| | ||| |||||||| | || || | Sbjct 47382303 ATTGAAATGCTTGAGAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATT 47382244 Query 107808 CACGTGGATGTGAAGTCCCCAGAGACTTTCAAAGAGGCGGTCAAGGCCATTATTTCCTGC 107867 |||||||| || | ||| | || || ||||| | || |||| |||||| Sbjct 47382243 CACGTGGACAAAAAAGCAGAGGAGCCCTTTTTAGCCGCGGTGACGGGCATTGCGTCCTGC 47382184 Query 107868 TTCCCCAATGTCTTCATGGCCAGTAAGTTGGTCCCGGTGGTTTATGCCTCCTGGTCCAGA 107927 || || ||||| ||||||| || ||| || ||||||| |||||| | Sbjct 47382183 TTGAAGAACGTCTTTGTGGCCAGCCAGCTGGAGAGCGTCATTTATGCGTCCTGGAGTCGG 47382124 Query 107928 GTGCAAGCTGACCTGAACTGTATGGAAGACTTGCTCCAGAGCTCAGTGCCA--TGGAAGT 107985 || || |||||||| ||||| ||| ||| || | ||| | ||||| | ||||||| Sbjct 47382123 GTTCAGGCTGACCTCAACTGCATGAGGGACCTG-TACAGCA-TGAGTGCAAACTGGAAGT 47382066 Query 107986 ACTTACTGAATACATGCGGGACAGACTTCCCCATAAAGACCAATGCCGAGATGGTC 108041 |||| | || ||||| | |||||||| | || ||||| || |||||| Sbjct 47382065 ACTTGATCAACCTCTGCGGTATGGACTTCCCTCTGAAAACCAACCTGGAAATGGTC 47382010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 348241910927790