Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_002686.2 Length=124784 Score E Sequences producing significant alignments: (Bits) Value seq26 325 3e-84 seq22 114 1e-20 seq8 107 2e-18 seq13 95.1 1e-14 >seq26 Length=66536344 Score = 325 bits (360), Expect = 3e-84 Identities = 554/800 (69%), Gaps = 6/800 (1%) Strand=Plus/Minus Query 19978 GATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGA 20037 || || || || || || || || || || || || ||||| |||| ||| ||||| Sbjct 25930168 GACCGCACGGGCACCGGCACCTTGTCGGTGTTCGGCATGCAGGTGAGATACAACCTGAGA 25930109 Query 20038 AATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTA 20097 |||||||||| | | || || ||||| || || ||||| |||||| | || || || Sbjct 25930108 GATGAATTTCCTCTGCTCACAACCAAACGAGTGTTCTGGAAGGGCGTTTTGGAGGAATTG 25930049 Query 20098 TTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATT 20157 | |||||||| || ||||| |||||| ||| || || |||||||| | || Sbjct 25930048 CTGTGGTTTATCAAGGGATCCACAAATGCTAAAGAACTGTCCTCCAAAGGAGTGAGAATC 25929989 Query 20158 TGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATT---TGACAACCGTCAA 20214 ||| || |||| || | ||| | ||||| ||||| || || || || Sbjct 25929988 TGGGATGCCAATGGGTCCCGAGATTTTCTGGACAGCCTGGGATTCTCTG-CA--CGACAG 25929932 Query 20215 GAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATATGTT 20274 || |||||| |||| || || ||||| || || |||||||||||||| || || || Sbjct 25929931 GAAGGGGATCTGGGCCCAGTTTATGGTTTCCAGTGGAGACATTTTGGCGCAGACTACAAA 25929872 Query 20275 GACATGAACACAAATTATTTTGGACAAGGAGTAGATCAATTACAAAATGTTATTAATTTA 20334 || ||| | || |||| | || ||||||||||| || | ||||| || ||| | Sbjct 25929871 GATATGGAATCAGATTACTCGGGTCAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACC 25929812 Query 20335 ATTAAAACGAACCCAAACGACAGAAGAATTATTTTATGCGCCTGGAACGCTAAAGATGTG 20394 || ||||| | ||| | ||||||||||| || | || ||||||||| | |||||| | Sbjct 25929811 ATCAAAACCAGCCCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCAAAAGATCTT 25929752 Query 20395 CCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAATAATGAA 20454 || | ||||| ||||||| || ||| || || ||||| || || || ||| || Sbjct 25929751 CCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTAGCGAATGGGGAG 25929692 Query 20455 TTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTTCAATATT 20514 |||| || || | || || | || | |||||||| |||||||| || ||||| ||| Sbjct 25929691 CTGTCTTGCCAGCTCTACCAGAGGTCGGGAGATATGGGCCTGGGTGTGCCCTTCAACATT 25929632 Query 20515 GCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAGATTTAAAAACGGGTGAC 20574 || || ||||| |||||||| || ||||||||||| |||| |||| | || || Sbjct 25929631 GCCAGCTATGCCCTGCTTACCTACATGATTGCACACACCACAGGCCTAAAGCCAGGGGAT 25929572 Query 20575 TTAGTCCACACCATAGGAGACGCGCATATTTACCTTAATCATATAGAACCTTTAAAATTA 20634 || ||||||||| | ||||| || ||||||||||| |||||||| || || | ||| | Sbjct 25929571 TTTGTCCACACCTTGGGAGATGCACATATTTACCTGAATCATATCGAGCCCCTGAAAATT 25929512 Query 20635 CAGTTAACACGACAACCAAAACAATTCCCAACTCTTCGCATTACTCGAACTGTTAAAGAT 20694 ||| | ||| | |||| || ||||||| || ||| ||||| ||| | Sbjct 25929511 CAGCTTCAGCGAGAGCCAAGACCTTTCCCAAAGCTCAAAATTCTTCGAAAAGTTGAGACA 25929452 Query 20695 ATTAACGATTTTAAAGCTGATGATTTTGTGTTAGAAGGTTATAATCCCCATAATTCAATT 20754 ||| | ||||| | || ||| || ||| | | |||||||||||||| ||| | ||| Sbjct 25929451 ATTGATGATTTCAGAGTTGAAGACTTTCAGATTGAAGGTTATAATCCACATCCAGCGATT 25929392 Query 20755 CCAATGGAAATGTCTGTTTA 20774 ||||||||| | ||||| Sbjct 25929391 AAGATGGAAATGGCCGTTTA 25929372 >seq22 Length=61813736 Score = 114 bits (126), Expect = 1e-20 Identities = 278/415 (67%), Gaps = 31/415 (7%) Strand=Plus/Minus Query 20008 TTTGGAATGCAATCTCGATATAACTTGAGAAATGAATTTCCCTTATTAACTACGAAACGG 20067 || || ||||| | | ||| ||| ||||| |||||||| | | | || || ||||| Sbjct 17834191 TTAGGCATGCAGGCACCATACAACCTGAGAGATGAATTTTCTCTGCTCACAACCAAACGA 17834132 Query 20068 GTATTTTGGAAAGGCGTTGTTGAAG-AGTTATTATGGTTTATTAAAGGATCAACAAATTC 20126 || || | ||| || ||| |||||| |||| | |||||||| ||||||| |||||| | Sbjct 17834131 GTGTTCTAGAAGGGTGTT-TTGAAGGAGTTGCTGTGGTTTATCAAAGGATGCACAAATGC 17834073 Query 20127 TACCGAGCTTGTAGAAAAAGGAGTTAAGATTTGGAGCGCACATGGATCTAAGCAATTTTT 20186 || || || |||||||| | || ||| || |||| || | | |||| Sbjct 17834072 TAAAGAACTGTCCTCCAAAGGAGTGAGAATCTGGGATGCCAATGGGTCC---CGAGTTTT 17834016 Query 20187 AC---ACAGCAATGGATT---TGACAACCGTCAAGAGGGGGATTTGGGTCCTGTGTATGG 20240 | |||||| ||||| || || || || || ||||| |||| || || ||||| Sbjct 17834015 TCTGGACAGCATGGGATTCTCTG-CA--CGACAGGAAGGGGACCTGGGCCCAGTTTATGG 17833959 Query 20241 ATTTCAATGGAGACATTTTGGAGCTGAATATGTTGACATGAACACAAATTATTTTGGACA 20300 || || |||||||||||| |||| || | ||||| || | || || Sbjct 17833958 TTTCCAGTGGAGACATTTTTGAGCAGACT--------------ACAAA-GATATGGGTCA 17833914 Query 20301 AGGAGTAGATCAATTACAAAATGTTATTAATTTAATTAAAACGAACCCAAACGACAGAAG 20360 ||||||||| || | ||||| || ||| | | | ||||| || || |||| ||||| Sbjct 17833913 AGGAGTAGAACAGCTGCAAAAAGTGATTGA--CACTCAAAACCAATCCTGACGAGAGAAG 17833856 Query 20361 AATTATTTTATGCGCCTGGAACGCTAAAGATGTGCCTTTAATGGCTTTGCCTCCA 20415 ||| || | || | ||||||| | |||||| | || | |||| | |||||| Sbjct 17833855 AATCATGATTTGTGTCTGGAACCCAAAAGATCTTCCCCTTATGGTACTTCCTCCA 17833801 >seq8 Length=88571779 Score = 107 bits (118), Expect = 2e-18 Identities = 203/296 (69%), Gaps = 6/296 (2%) Strand=Plus/Minus Query 19978 GATCGAACCGGAACTGGAACGTTATCTGTATTTGGAATGCAATCTCGATATAACTTGAGA 20037 || || || || || || || || || || || || ||||| |||| ||| ||||| Sbjct 15948844 GACCGCACGGGCACCGGCACCTTGTCGGTGTTCGGCATGCAGGTGAGATACAACCTGAGA 15948785 Query 20038 AATGAATTTCCCTTATTAACTACGAAACGGGTATTTTGGAAAGGCGTTGTTGAAGAGTTA 20097 |||||||||| | | || || ||||| || || ||||| |||||| | || || || Sbjct 15948784 GATGAATTTCCTCTGCTCACAACCAAACGAGTGTTCTGGAAGGGCGTTTTGGAGGAATTG 15948725 Query 20098 TTATGGTTTATTAAAGGATCAACAAATTCTACCGAGCTTGTAGAAAAAGGAGTTAAGATT 20157 | |||||||| || ||||| |||||| ||| || || |||||||| | || Sbjct 15948724 CTGTGGTTTATCAAGGGATCCACAAATGCTAAAGAACTGTCCTCCAAAGGAGTGAGAATC 15948665 Query 20158 TGGAGCGCACATGGATCTAAGCAATTTTTACACAGCAATGGATT---TGACAACCGTCAA 20214 ||| || |||| || | ||| | ||||| ||||| || || || || Sbjct 15948664 TGGGATGCCAATGGGTCCCGAGATTTTCTGGACAGCCTGGGATTCTCTG-CA--CGACAG 15948608 Query 20215 GAGGGGGATTTGGGTCCTGTGTATGGATTTCAATGGAGACATTTTGGAGCTGAATA 20270 || |||||| |||| || || ||||| || || |||||||||||||| || || || Sbjct 15948607 GAAGGGGATCTGGGCCCAGTTTATGGTTTCCAGTGGAGACATTTTGGCGCAGACTA 15948552 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | || | ||||| ||||||| || ||| || || ||||| || || || || Sbjct 15943054 AGATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGTCAATTCTATGTAGCGAA 15942995 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 | || |||| || || | || || | || | |||||||| |||||||| || || Sbjct 15942994 TGGGGAGCTGTCCTGCCAGCTCTACCAGAGGTCGGGAGATATGGGCCTGGGTGTGCCCTT 15942935 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAG 20557 ||| ||||| || ||||| |||||||| || ||||||||||| | |||| Sbjct 15942934 CAACATTGCCAGCTATGCCCTGCTTACCTACATGATTGCACACATCACAG 15942885 >seq13 Length=46045664 Score = 95.1 bits (104), Expect = 1e-14 Identities = 123/170 (72%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 20388 AGATGTGCCTTTAATGGCTTTGCCTCCATGTCATATGCTATGCCAATTTTACGTTGCTAA 20447 |||| | || | ||||| ||||||| || ||| || |||||||| || || || || Sbjct 164365 AGATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTGCCAATTCTATGTAGCGAA 164424 Query 20448 TAATGAATTGTCGTGTCAAATGTATCAACGATCCGCTGATATGGGACTGGGTGTTCCTTT 20507 || || |||| || || | || || | || | | |||||| |||||||| || || Sbjct 164425 TAGGGAGCTGTCTTGCCAGCTCTACCAGAGGTCAGGAGTTATGGGCCTGGGTGTGCCCTT 164484 Query 20508 CAATATTGCAAGTTATGCGCTGCTTACGTATATGATTGCACATGTTACAG 20557 ||| ||||| || ||||| ||||| || || ||||||||||| | |||| Sbjct 164485 CAACATTGCCAGCTATGCCCTGCTCACCTACATGATTGCACACATCACAG 164534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 399153179876575