Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq2 127 2e-24 seq7 116 3e-21 seq40 102 6e-17 >seq2 Length=98408828 Score = 127 bits (140), Expect = 2e-24 Identities = 148/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 45137 AGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTT 45196 || ||| ||| ||||| |||||||||||| ||| ||| | || ||||| ||||| Sbjct 12204389 AGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCCAGCTGTTTG 12204330 Query 45197 CCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGC 45256 || || || |||| || ||| ||||| || || | ||||||||||||| || ||| | Sbjct 12204329 CCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATACCCTCCTTGTCCTGGATCTTTGCC 12204270 Query 45257 TTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGA 45316 || || | | | | |||| | ||| ||||||| ||| || |||||||| ||||| Sbjct 12204269 TTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTGCCAGTCAGG 12204210 Query 45317 GTCTTCACAAAGATTTGCAT 45336 |||||||||||||| ||||| Sbjct 12204209 GTCTTCACAAAGATCTGCAT 12204190 >seq7 Length=85103860 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||| ||||| |||||||||||| ||| || | || ||| Sbjct 11188366 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCAGCCATCTTCC 11188307 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || | ||| || || || |||| || ||| ||||| || || | |||||||||||| Sbjct 11188306 AGCTCTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCCTTGTCCTGG 11188247 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | |||| | ||| ||||| | ||| || |||||| Sbjct 11188246 ATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCGAGGGTGATGGTCTTG 11188187 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||||||||||| ||||| Sbjct 11188186 CCTATCAGGGTCTTCACAAAGATCTGCAT 11188158 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||| ||||| |||||||||||| ||| ||| | || ||| Sbjct 11188138 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCATCTTCC 11188079 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || ||||| || || || |||| || ||| ||||| || || | || ||||||||| Sbjct 11188078 AGCTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGG 11188019 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || ||| ||| || | | | | |||| | ||| ||||||| ||| || ||||| Sbjct 11188018 ATCTTTGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCCAGGGTGATGGTCTTA 11187959 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || || | || ||||||||||| ||||| Sbjct 11187958 CCAGTTAAGGTTTTCACAAAGATCTGCAT 11187930 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||| |||||| ||| ||| ||||| |||||||| | || ||| | || ||| Sbjct 35411308 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATTAAAGAGAGTGCGGCCATCTTCC 35411249 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || || || || || || || | ||||| ||||| || || | ||||| || ||| Sbjct 35411248 AGCTGCTTGCCAGCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGG 35411189 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 || || ||| || | | | | |||| | |||||||| || ||| || |||||| Sbjct 35411188 ATCTTGGCCTTGACGTTCTCAATGGTGTCACTGGGCTCCACCTTCAGGGTGATGGTCTTG 35411129 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || ||||| ||||||| ||||||||||| ||| Sbjct 35411128 CCAGTCAGGGTCTTCATGAAGATTTGCATTTTG 35411096 >seq40 Length=10521589 Score = 102 bits (112), Expect = 6e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 45130 CAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAG 45189 || ||||| ||| ||| ||||| |||||||||||| | | | | || ||||| Sbjct 9790142 CAGGTGCAAAGTGGACTCTTTCTGGATGTTGTAGTCGGACGGGGTCCCTCCATCCTCCAG 9790083 Query 45190 TTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAAT 45249 | || ||||| ||||||| || ||| |||||||| || | || |||||||| || Sbjct 9790082 CTACTTGCCGGCAAATATCAGCCTCTGATGGTCGGGTGGGATGCCTTCCTTGTCTTGGAT 9790023 Query 45250 TTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCC 45309 || ||| || | | | | |||| | ||| ||||| | || || |||||||| Sbjct 9790022 CTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCGACCTCAAGAGTGATGGTCTTGCC 9789963 Query 45310 CGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 ||||| |||||||||||||| ||||||||| Sbjct 9789962 TGTCAGGGTCTTCACAAAGATCTGCATGTTG 9789932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395044697108035