Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq4 242 4e-59 seq26 215 5e-51 seq87 159 3e-34 seq9 123 2e-23 seq42 118 1e-21 >seq4 Length=96435083 Score = 242 bits (268), Expect = 4e-59 Identities = 531/785 (68%), Gaps = 18/785 (2%) Strand=Plus/Plus Query 13859 AAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGA 13918 || ||| |||| || | ||| ||| || || || || || || ||||| | ||| Sbjct 65463857 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 65463916 Query 13919 TATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATA 13978 || || | |||| || ||||||||||| || || ||||| ||||| ||||||||||| Sbjct 65463917 TACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTTCCATG 65463976 Query 13979 AAATCAAATGGATTTGTTGACAT--AAACACTTTATCACAACCTAGTTCTAATAGTAATC 14036 || |||||||||||| | || | ||| ||| | | | ||||| || | | | | Sbjct 65463977 AAGTCAAATGGATTTTCT-ACTTTGAAAATCTTGCTGA-ACCCTAGCTCCAGCATAAGCC 65464034 Query 14037 TATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 14096 | ||||| | ||| || || || || ||| | | || ||||| || || || || | Sbjct 65464035 TGTCCGCCACGAATTCGATGTACTGCTTCATCAGGGCGCAGTTCATCCCGATGAGCTTCA 65464094 Query 14097 CAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATC- 14155 |||| | | || | ||| || | |||| ||| || ||| ||||| || Sbjct 65464095 CAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTGC---GTTGATAATGATTT 65464151 Query 14156 ---GTAATAATTTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCAAAA 14212 ||| | || | | | || | | || || | || || | || ||||| Sbjct 65464152 CTTGTACTCTTTGC-TCCGGCGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGCAAAG 65464210 Query 14213 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 14272 ||| || | ||||||||||| |||||||| ||||| ||||| || | || |||||| Sbjct 65464211 CAACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATC 65464270 Query 14273 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 14332 | ||| ||||| || | ||| ||||||| | || || || || |||| || || || Sbjct 65464271 AGTCCCCGTTTCTTGAGCCAGAATATTGACACAAAGGAGCCAGAGAAGAGGATCCCTTCC 65464330 Query 14333 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATATCCATTT 14391 || |||||||| || | | |||||||||| | | |||| ||||| | ||||| Sbjct 65464331 ACAGCAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCCAATCCAACG 65464390 Query 14392 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATG 14451 ||||| || | || ||||| | | || |||||| ||||||||||| || | || Sbjct 65464391 CAGGGCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATA 65464450 Query 14452 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14511 |||| ||||||| | | | |||||| ||||| || || | || ||||||||||| || Sbjct 65464451 TTCCCTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATG 65464510 Query 14512 -TATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG--ACCATTGTAC 14568 |||||||||||| || || || || ||||| ||||| | || |||| ||| || || Sbjct 65464511 TTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACC--TGAAC 65464568 Query 14569 CTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14628 ||| | || | || ||| |||||||| ||||| |||||||| || ||||| || Sbjct 65464569 TTCTTGGCTGAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTCGCAGCAAAGAA 65464628 Query 14629 TGCCA 14633 |||| Sbjct 65464629 AGCCA 65464633 >seq26 Length=66536344 Score = 215 bits (238), Expect = 5e-51 Identities = 311/434 (72%), Gaps = 11/434 (3%) Strand=Plus/Plus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| |||| || | | ||||||||| |||||||| || || |||||||| | Sbjct 31519417 CAGGCAAAGCCACAGTGTAAACGCTCATCTCTGCTAATAAGCTCTTTGGAAAATGTAAGG 31519476 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 || ||||||| ||| |||| || | ||| ||||||| || || || || || ||||| Sbjct 31519477 CCAGGCATCAGTCCCTGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAG 31519536 Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGA 14382 || | || || |||||||| || | | || ||||||| | | | ||||||| || | Sbjct 31519537 ATGTCTTCTACAGCAGCAAAGGCCACAACTCTTTCTCCATAGGTAGTCTTTTTGTCTCCA 31519596 Query 14383 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 ||||| ||||| |||| | ||||| | | || |||||| ||||||||||| Sbjct 31519597 AATCCAACGCAGGGCCCAGTCAGCCTACTTTTTCACACAAGGCATTGTCTCAATAGCATT 31519656 Query 14443 AAATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACA 14501 || | || |||| ||||||| | | ||| || ||| ||||| || | || |||| Sbjct 31519657 GAAGAGATATTCCCTCTCTTTGGAATCTTTAA-----TGTGTCAATGAGGAGACTGTACA 31519711 Query 14502 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG--A 14559 ||||||| ||| |||||||||| || || || || ||||| ||||| | || |||| | Sbjct 31519712 TTTCAGAATGTTTGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAA 31519771 Query 14560 CCATTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14619 || || || ||| | ||| | || ||| |||||||| ||||| |||||||| || Sbjct 31519772 CC--TGAACTTCTTGGCTAAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTGGC 31519829 Query 14620 TGCAAAAAATGCCA 14633 |||||| || |||| Sbjct 31519830 TGCAAAGAAAGCCA 31519843 >seq87 Length=2570995 Score = 159 bits (176), Expect = 3e-34 Identities = 244/346 (71%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 14290 CCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTAT 14349 ||| ||||||| | || || || || ||||| || || || || |||||||| | | Sbjct 1819201 CCAGAATATTGACACAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCAC 1819260 Query 14350 TAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttt 14409 | |||||||||| | | || | ||||| | ||||| | | ||| || | || Sbjct 1819261 AACTCGTTCTCCATAGGTAGCATCTTTGTCCCCAATCCAATGCACGGTCCAGTCGGCCTT 1819320 Query 14410 ttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCCTTCTCTTTAGTACT 14469 ||||| | | || |||||| ||||||||||| | | || |||| ||||||| | | Sbjct 1819321 CTTTTTCACACAAGGCATTGTCTCAATAGCATTGACAAGATATTCCCTCTCTTTGGAATC 1819380 Query 14470 TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTAT 14529 | |||||| || |||| || | || ||||||||||| |||||||||||||| || || Sbjct 1819381 TTTAATGTAGGTGACAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAAT 1819440 Query 14530 CTGAAAACCATAAAAACATCTAGCTTCTG--ACCATTGTACCTCTGAGTAAAATCTTTCG 14587 || || ||||| ||||| || || |||| ||| || || ||| | ||| | ||| Sbjct 1819441 TTGGAAGCCATAGAAACAGCTGGCCTCTGTAACC--TGAACTTCTTGGCTAAAGCACTCG 1819498 Query 14588 GCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14633 ||| ||||||||| |||| |||||||| | |||| || |||| Sbjct 1819499 ACCAGATTTTCATTGACTAATCCATCACTCGTCACAAAGAAAGCCA 1819544 >seq9 Length=86001432 Score = 123 bits (136), Expect = 2e-23 Identities = 196/279 (70%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| ||||| || | ||||||||||| |||||||| ||||| ||||| || | Sbjct 36370047 CAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGG 36370106 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 || ||||||| ||| |||| | | ||| ||||||| || || || || | |||| Sbjct 36370107 CCAGGCATCAGTCCCAGTTTCCTGAGCCAGAATATTGACGCAAAAGAGCC---AGAGAAG 36370163 Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14383 || || || | |||||||| || | | |||||||||| | | |||| ||||| | Sbjct 36370164 ATCCCTTCCATAGCAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCA 36370223 Query 14384 ATCCATTTTCTAGCCCATTCAG-AtttttttttAATAAAATCCATTGTTTCAATAGCATT 14442 ||||| ||||| |||| || ||||| | | || |||||| ||||||||||| Sbjct 36370224 ATCCAACGCAGGGCCCAGTCAGCCTTCTTTTTCCACACAAGGCATTGTCTCAATAGCATT 36370283 Query 14443 AAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGT 14481 || | | ||| ||||||| | | | |||||| || Sbjct 36370284 GAAGAGCTACTCCCTCTCTTTGGAATCTTCAATGTAAGT 36370322 >seq42 Length=9663327 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 14204 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 14263 || ||||| ||||| || | ||||||||||| |||||||| ||||| ||||| || | Sbjct 3435797 CAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGG 3435738 Query 14264 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 14323 || ||||||| ||| ||||| || | ||| ||||||| || || || || || ||||| Sbjct 3435737 CCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAG 3435678 Query 14324 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14361 || || || || |||||||| || | | ||||||||| Sbjct 3435677 ATCCCTTCCACAGCAGCAAAGGCCACAACTCGTTCTCC 3435640 Score = 114 bits (126), Expect = 1e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 14396 GCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCC 14455 ||||| || | || ||||| | | || |||||| ||||||||||| || | || |||| Sbjct 3435477 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 3435418 Query 14456 TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATG 14515 ||||||| | | | |||||| ||||| || || | || ||||||||||| |||||| Sbjct 3435417 CTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATG 3435358 Query 14516 TTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 |||||||| || || || || ||||| ||||| | || |||| Sbjct 3435357 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTG 3435315 Score = 114 bits (126), Expect = 1e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 14396 GCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATGTTCC 14455 ||||| || | || ||||| | | || |||||| ||||||||||| || | || |||| Sbjct 3436363 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 3436304 Query 14456 TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATG 14515 ||||||| | | | |||||| ||||| || || | || ||||||||||| |||||| Sbjct 3436303 CTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATG 3436244 Query 14516 TTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14558 |||||||| || || || || ||||| ||||| | || |||| Sbjct 3436243 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTG 3436201 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 13859 AAATCAACATCTAACGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGA 13918 || ||| |||| || | ||| ||| || || || || || || ||||| | ||| Sbjct 3438637 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 3438578 Query 13919 TATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATA 13978 || || | |||| || ||||||||||| || || ||||| ||||| ||||||||||| Sbjct 3438577 TACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 3438518 Query 13979 AAATCAAATGGATTT 13993 || ||||| |||||| Sbjct 3438517 AAGTCAAACGGATTT 3438503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482307404257800