Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq4 183 3e-41 seq73 138 1e-27 seq38 118 9e-22 seq33 118 9e-22 seq2 109 5e-19 seq9 87.8 2e-12 seq40 86.0 6e-12 seq7 84.2 2e-11 >seq4 Length=96435083 Score = 183 bits (202), Expect = 3e-41 Identities = 598/917 (65%), Gaps = 23/917 (3%) Strand=Plus/Minus Query 57507 GATGAACCACTTTTGCAAGAGAATCCCCGTAGATTTGTCATGTTTCCGATTGAATATCCA 57566 ||||| || ||| || ||| |||||||| || || | ||||| || ||||| | Sbjct 65464819 GATGAGCC-CTTCTGAGAGAAAATCCCCGCCACTTCGTGGTCTTTCCCATCGAATACCAT 65464761 Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 || || ||| | |||||||| || || || || || || ||||| | || || || ||| Sbjct 65464760 GATATCTGGCAGATGTACAAGAAAGCCGAGGCTTCCTTCTGGACGGCTGAGGAGGTCGAC 65464701 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || |||||| | | ||||| | || ||| |||||| ||||||| Sbjct 65464700 CTCTCCAAGGATATTCAACACTGGGAAGCGCTGAAACCCGACGAGAGACATTTTATATCT 65464641 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 ||||| |||| || || || || ||||| || || || || || |||| || | Sbjct 65464640 CACGTCCTGGCTTTCTTTGCTGCGAGTGATGGCATAGTCAATGAAAACCTGGTGGAGCGC 65464581 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || |||||||| || || || ||||| | || || || || || ||| | ||||| Sbjct 65464580 TTCAGCCAAGAAGTTCAGGTTACAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATG 65464521 Query 57807 GAAAACGTG-CATTCAGAAATGTATTCGCTACTCATCGATACGTACGTGAAGGACAACGA 57865 |||||| | ||||| |||||||| || ||||||||||| ||| | || || | | Sbjct 65464520 GAAAACATAACATTCTGAAATGTACAGTCTCCTCATCGATACTTACATTAAAGATTCCAA 65464461 Query 57866 CGAGAAACGTAGA-CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAG 57924 ||| | | | | || ||||| || || || |||||||| | |||||||| | Sbjct 65464460 AGAG-AGGGAATATCTCTTCAATGCTATTGAGACAATGCCTTGTGTGAAAAAGAAGGCCG 65464402 Query 57925 AGTGGTCAATCAAATGGAT------AAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAA 57978 | ||| | | ||||| | |||| || || | | || | | Sbjct 65464401 ACTGGGCCCTGCGTTGGATTGGGGGACAAAG-----AAGCTACCTATGGAGAACGAGTTG 65464347 Query 57979 TCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGA 58038 | || || || || || ||||| || |||| || ||| ||||| | ||||||| ||| Sbjct 65464346 TGGCCTTTGCTGCTGTGGAAGGGATCCTCTTCTCTGGCTCCTTTGTGTCAATATTCTGGC 65464287 Query 58039 TGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGC-GCGAC 58097 | |||||||| || |||||||| ||||| |||||| ||||||| | || | || | || Sbjct 65464286 TCAAGAAACGGGGACTGATGCCTGGCCTTACGTTTTCCAACGAGCTTAT-TAGCAGAGAT 65464228 Query 58098 GAGGGTCTCCATACTGAT--TTTGCGTGCCTAATGTACTCTCACATTGTCAATAAACCGA 58155 |||||| | | |||| | ||||| ||||| |||| | ||| | || | || ||| Sbjct 65464227 GAGGGTTT--ACACTGTTGCTTTGCCTGCCTGATGTTCAGGCACCTGGTACACAAGCCGC 65464170 Query 58156 CGCGGGATCGCATCTTGGACATTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCA 58215 || | | | | || || || | | | || || | | || | |||||| ||| Sbjct 65464169 CGGAGCAAAGAGTACAAGAAATCATTATCAACGCAGTGAGGCTAGAGCAGGAGTTTCTCA 65464110 Query 58216 CCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTG 58275 | || ||||| || ||| | |||| |||||| | ||||| ||||||| | Sbjct 65464109 CGGAGGCCCTGCCTGTGAAGCTCATCGGGATGAACTGCGCCCTGATGAAGCAGTACATCG 65464050 Query 58276 AGTTTGTTGCCGACAGACTTTTGCTCGAACTGATTGGAGAGCGTCA-TTACAACACGAAA 58334 | || || || ||||| ||| |||| || || | | ||| | || ||| || Sbjct 65464049 AATTCGTGGCGGACAGGCTTATGCTGGAGCT-AGGGTTCAGCAAGATTTTCAAAGTAGAA 65463991 Query 58335 AATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGGCAAGACAAACTTTTTCGaaaaa 58394 ||||| ||||| || ||| | || || || || || ||||||||||| || || || Sbjct 65463990 AATCCATTTGACTTCATGGAAAATATTTCACTAGAAGGAAAGACAAACTTCTTTGAGAAG 65463931 Query 58395 aaaGTTAGCGAATATCA 58411 ||| |||| ||||| Sbjct 65463930 CGAGTGGGCGAGTATCA 65463914 >seq73 Length=3316092 Score = 138 bits (152), Expect = 1e-27 Identities = 120/149 (81%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 23048 ACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTG 23107 ||||| |||||| || |||||||| ||||| |||||||| ||||| || ||||| ||| Sbjct 2392970 ACCTCATCTTTGCTGGTATACTCTACTATTTCTGTACATAGGTTGCTGCATTTTATGGTG 2392911 Query 23108 CCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTG 23167 |||| || ||||||||| || ||||| || ||||| |||||||||||||| || ||| Sbjct 2392910 CCCAGGTTCTGCTGGTTGCTCTTCCGATTACAGGAATCTTTGTAGAGCATGTATGGGGTG 2392851 Query 23168 CCCGTCTCGACCTGCGACTCGATGATCGC 23196 |||||||| ||| ||||| ||||| || Sbjct 2392850 CCCGTCTCTGTCTGAGACTCAATGATGGC 2392822 >seq38 Length=14253900 Score = 118 bits (130), Expect = 9e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||||||||| || | || ||||| ||||| |||| |||||||| || Sbjct 298909 ATGCAGATTTTCGTAAAGACCCTTAAGGGGAAAACCATCACGTTCGAGGTTGAACCCTCG 298850 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| ||||| | || ||| |||||||| | || || || ||| Sbjct 298849 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 298790 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || |||||||| ||| ||||||| ||| || || || ||| Sbjct 298789 CAGAGGCTGATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAAC 298730 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || ||||| || || || |||||| |||| || ||||| Sbjct 298729 ATCCAAAAGGAGTCCACCCTTCATTTGGTGCTGAGACT 298692 >seq33 Length=41749222 Score = 118 bits (130), Expect = 9e-22 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||||| ||||| || || || ||||| ||||| |||| |||||||| || Sbjct 34672402 ATGCAGATTTTCGTGAAGACCCTTACGGGAAAAACCATCACGCTCGAGGTTGAACCCTCG 34672343 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| ||||| | || ||| |||||||| | || || || ||| Sbjct 34672342 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 34672283 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||||||||| ||| ||||||| ||| || || || ||| Sbjct 34672282 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAAC 34672223 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || ||||| || || || |||||| |||| | ||||| Sbjct 34672222 ATCCAAAAGGAGTCCACCCTTCATTTGGTGTTGAGACT 34672185 >seq2 Length=98408828 Score = 109 bits (120), Expect = 5e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| |||||| | ||||| || || || ||||| ||||| |||| |||||||| || Sbjct 61256453 ATGCAGATTTTCATGAAGACCCTTACGGGGAAAACCATCACGCTCGAGGTTGAACCCTCG 61256512 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | |||| ||||| | || ||| |||||||| | || || || ||| Sbjct 61256513 GACACTATAGAAAATGTCAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 61256572 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || ||||||||||| ||| ||||||| ||| || || || ||| Sbjct 61256573 CAGAGGCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGTACTTTGTCTGACTACAAC 61256632 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 || ||||| || || || |||| | |||| | ||||| Sbjct 61256633 ATCCAAAAGGAGTCCACCCTTCGTTTGGTGTTGAGACT 61256670 >seq9 Length=86001432 Score = 87.8 bits (96), Expect = 2e-12 Identities = 258/392 (66%), Gaps = 8/392 (2%) Strand=Plus/Minus Query 58006 TCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCC 58065 |||| || ||| |||||| ||||||| ||| | | ||||| || |||||||| |||| Sbjct 36370164 TCTTCTCTGGCTCTTTTGCGTCAATATTCTGGCTCAGGAAACTGGGACTGATGCCTGGCC 36370105 Query 58066 TGACGTTTAGCAACGAGTTGATATCGC-GCGACGAGGGTCTCCATACTGATTTTGCGTGC 58124 | |||||| ||||||| | || | || | || |||||| | || ||| ||||| ||| Sbjct 36370104 TTACGTTTTCCAACGAGCTTAT-TAGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGC 36370046 Query 58125 CTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCATCTTGGACATTATCACC 58184 || |||| | ||| | || | || ||| || | | | | || || |||| | Sbjct 36370045 CTGATGTTCAGGCACCTGGTACACAAGCCGCCGGAGCAAAGAGTACAAGAAATCATCATC 36369986 Query 58185 GAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGT 58244 | || || ||| || | |||||| |||| || ||||| || ||| | |||| Sbjct 36369985 AACGCAGTGAGGATAGAGCAGGAGTTTCTCACGGAGGCCCTGCCTGTGAAGCTCATCGGG 36369926 Query 58245 ATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAA 58304 || | | ||||| | ||||| || || || || ||||| ||| |||| || Sbjct 36369925 ATAAGCTGCACCCTGATGAAGCACTACATCGAATTCGTGGCGGACAGGCTTATGCTGGAG 36369866 Query 58305 CT--GATTGGAGAGCGTCATTACAACACGA-AAAATCCGTTTGATTTTATGAATCTGATC 58361 || |||| ||| ||| | | | ||||||||||||| | ||| | || Sbjct 36369865 CTAGGATTC---AGCAAGATTTTCAAAGTAGAAAATCCGTTTGACTCCATGGAAAATATT 36369809 Query 58362 TCGCTCGAGGGCAAGACAAACTTTTTCGaaaa 58393 || || || || ||||||||||| || || || Sbjct 36369808 TCACTAGAAGGGAAGACAAACTTCTTTGAGAA 36369777 >seq40 Length=10521589 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 |||||||| || || || ||||| ||||||||||| || ||||| | || || || || Sbjct 9789933 AACATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACTCTTGAGGTCGAGCCC 9789992 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| |||| | ||||| | || |||||||||||| | || |||||| Sbjct 9789993 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCCGAC 9790052 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || ||| | || ||||| || ||||| || |||| || ||| | ||| || Sbjct 9790053 CATCAGAGGCTGATATTTGCCGGCAAGTAGCTGGAGGATGGAGGGACCCCGTCCGACTAC 9790112 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || ||||| || ||| | || ||| | ||| | ||| | || || Sbjct 9790113 AACATCCAGAAAGAGTCCACTTTGCACCTGATGCTTTGTCTGTGTGGTGG 9790162 >seq7 Length=85103860 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || || | || || || || |||||| | || || || || Sbjct 11187930 ATGCAGATCTTTGTGAAAACCTTAACTGGTAAGACCATCACCCTGGAGGTCGAGCCCAGT 11187989 Query 31253 GACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | ||||| || ||| | ||||||||||||| | || || ||||| Sbjct 11187990 GACACCATCGAGAATGTCAAGGCAAAGA-TCCAGGACAAGGAAGGCATCCCCCCTGACCA 11188048 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||| | || || || || ||||||||| ||||||| || || ||| || || Sbjct 11188049 GCAGAGGCTGATCTTTGCAGGCAAACAGCTGGAAGATGGCCGCACCCTGTCCGACTACAA 11188108 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || ||||| || || || || ||||| || | || ||||| || Sbjct 11188109 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGCCTCAGGGGTGG 11188156 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||| ||| | ||||| ||||| ||||| || |||||| | | || || || Sbjct 35411097 AAAATGCAAATCTTCATGAAGACCCTGACTGGCAAGACCATCACCCTGAAGGTGGAGCCC 35411156 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 |||| | || | ||||| | || ||| || || ||| | || || ||| Sbjct 35411157 AGTGACACCATTGAGAACGTCAAGGCCAAGATCCAGGATAAAGAGGGCATCCCCCCTGAC 35411216 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| || || || |||||||| ||| ||||||| ||| | |||| Sbjct 35411217 CAGCAGCGACTCATCTTTGCTGGCAAGCAGCTGGAAGATGGCCGCACTCTCTTTAATTAC 35411276 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || ||||| || || || || ||||| || | || ||||| || Sbjct 35411277 AACATCCAGAAAGAGTCCACCCTGCACCTGGTCCTCCGTCTCAGGGGTGG 35411326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445731100873200