Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq26 122 2e-22 seq42 104 5e-17 >seq26 Length=66536344 Score = 122 bits (134), Expect = 2e-22 Identities = 321/482 (67%), Gaps = 20/482 (4%) Strand=Plus/Minus Query 35223 TTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGTGGAAGAACTCTCGTGGT 35282 |||| | ||||| ||||| | | ||||||| || ||| |||| ||| | ||||| Sbjct 25930101 TTCCTCTGCTCACAACCAAACGAGTGTTCTGGAAGGGCGTTTTGGAGGAATTGCTGTGGT 25930042 Query 35283 TCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAA-GAAGATACACATCTGGAAC 35341 | |||| ||| ||| | || |||||| || || || | || | | |||||| | Sbjct 25930041 TTATCAAGGGATCCACAAATGCTAAAGAACTGTCCTCCAAAGGAGTGAGA-ATCTGGGAT 25929983 Query 35342 GCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTAT----ACGATAGAGCAGAGGG 35397 || |||||||| || || ||| ||||||| || || | |||| || || || Sbjct 25929982 GCCAATGGGTCCCGAGATTTTCTGGACAGCCTGGGATTCTCTGCACGACAG----GAAGG 25929927 Query 35398 AGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATAT---GATAC 35454 ||| |||| || || || || ||||| ||| | |||||||| || || || |||| Sbjct 25929926 GGATCTGGGCCCAGTTTATGGTTTCCAGTGGAGACATTTTGGCGCAGACTACAAAGATA- 25929868 Query 35455 CTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCT 35514 || | | ||||| | || | || | || || || || | | | ||| | Sbjct 25929867 -TGGAAT-CAGATTACTCGGGTCAAGGAGTAGACCAGCTGCAAAAAGTGATTGACACCAT 25929810 Query 35515 GAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCA 35574 | | | || ||||| ||||| || || ||| || ||||| || | ||||||| Sbjct 25929809 CAAAACCAGCCCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCAAAAGATCTTCC 25929750 Query 35575 CCTTATGGCTCTTCCTCCATGCCACATGACTGCT--CAATTTTATGTGGCTAATGGAGAA 35632 ||| ||||| || ||||| ||||| || | || ||||| ||||| || ||||| || Sbjct 25929749 CCTGATGGCACTGCCTCCTTGCCA--TGCCCTCTGTCAATTCTATGTAGCGAATGGGGAG 25929692 Query 35633 TTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATT 35692 |||| |||||| | || ||| | |||||| | || |||| ||||||||||| ||| Sbjct 25929691 CTGTCTTGCCAGCTCTACCAGAGGTCGGGAGATATGGGCCTGGGTGTGCCCTTCAACATT 25929632 Query 35693 GC 35694 || Sbjct 25929631 GC 25929630 >seq42 Length=9663327 Score = 104 bits (114), Expect = 5e-17 Identities = 293/447 (66%), Gaps = 5/447 (1%) Strand=Plus/Plus Query 101909 GAACTAATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCC 101968 |||| | |||| ||||||||||| || ||||| |||||||| ||| | || || || Sbjct 3435643 GAACGAGTTGTGGCCTTTGCTGCTGTGGAAGGGATCTTCTTCTCTGGCTCTTTTGCGTCA 3435702 Query 101969 ATTTTCTGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATT 102028 || |||||| ||||||| |||| | ||||||| || || | ||||| ||| | ||| Sbjct 3435703 ATATTCTGGCTCAAGAAACGGGGACTGATGCCTGGCCTTACGTTTTCCAACGAGCTTATT 3435762 Query 102029 TCTAGGGACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTT 102088 || || || ||| | || | |||||||| ||| || |||| | | | || Sbjct 3435763 AGCAGAGATGAGGGTTTACACTGTGACTTTGCCTGCCTGATGTT---CAGGCACCTGGTA 3435819 Query 102089 GATACCCCATCAAGAG-AAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACA 102147 | | || | ||| |||| | | ||||| | | | ||| | | || || || Sbjct 3435820 CACAAGCC-GCCGGAGCAAAGAGTACAAGAAATCATTATCAACGCCTTGAGGATAGAGCA 3435878 Query 102148 AGAATTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAG 102207 || |||||||| | |||||||||| || | | || || | ||||| |||||| Sbjct 3435879 GGAGTTTCTCACGGAGGCCCTGCCTGTGAAGCTCATCGGGATAAGCTGCACCCTGATGAA 3435938 Query 102208 CCAGTACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTA 102267 || ||||| ||||| ||||| || | || || | || | ||| | ||| | Sbjct 3435939 GCACTACATCGAATTCGTGGCGGACAGGCTTATGCTGGAGCTAGGATTCAGCAAGATTTT 3435998 Query 102268 TAATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTT 102327 || || || || || | |||||| |||||||| || || ||||| ||||| Sbjct 3435999 CAAAGTAGAAAATCCGTTTGACTCCATGGAAAATATTTCACTAGAAGGGAAGACAAACTT 3436058 Query 102328 TTTTGAAAAGAGAGTCGCCGAGTATCA 102354 ||||| ||| | || | | ||||||| Sbjct 3436059 CTTTGAGAAGCGCGTGGGCAAGTATCA 3436085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989503678249925