Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq4 379 3e-100 seq26 315 9e-81 seq87 224 1e-53 seq9 188 9e-43 seq42 176 6e-39 seq73 107 2e-18 seq20 105 8e-18 seq7 104 3e-17 seq61 93.3 5e-14 seq4671 84.2 3e-11 >seq4 Length=96435083 Score = 379 bits (420), Expect = 3e-100 Identities = 641/923 (69%), Gaps = 9/923 (1%) Strand=Plus/Plus Query 33240 AAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTTTGG 33296 |||||| |||| || | ||| ||| ||| || | ||||| || ||||| | || Sbjct 65463857 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 65463916 Query 33297 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATG 33356 || || ||||| || || || || || || || |||||||| | ||| |||||||||||| Sbjct 65463917 TACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTTCCATG 65463976 Query 33357 AAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAATCTA 33416 || ||||| ||||| || ||| |||| || | || || | || || | || Sbjct 65463977 AAGTCAAATGGATTTTCTACTTTGAAAATCTTGCTGAACCCTAGCTCCAGCATAAGCCTG 65464036 Query 33417 TCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACT 33476 || || |||||||| || || ||||||| | || ||||| || ||||| || || Sbjct 65464037 TCCGCCACGAATTCGATGTACTGCTTCATCAGGGCGCAGTTCATCCCGATGAGCTTCACA 65464096 Query 33477 GGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTA 33536 || || ||| | || ||||| || || || | || || || | || || | Sbjct 65464097 GGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTGCGTTGATAATGATTTCTTGT 65464156 Query 33537 ACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAG 33596 || ||| || ||| |||| | || | ||||||| || || || ||| Sbjct 65464157 ACTCTTTGCTCCGGCGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGCAAAGCAACAG 65464216 Query 33597 TGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCA 33656 || | |||||| ||||| ||||| | ||||| |||||||| || || ||||| || || Sbjct 65464217 TGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAGTCCC 65464276 Query 33657 CGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCA 33716 || || || ||||| ||||| || | || || || || |||| ||| ||||| || ||| Sbjct 65464277 CGTTTCTTGAGCCAGAATATTGACACAAAGGAGCCAGAGAAGAGGATCCCTTCCACAGCA 65464336 Query 33717 GCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTA-TCCACTTTTGAGC 33772 |||||||| | || || |||||||| | | | |||| | |||| | || Sbjct 65464337 GCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCCAATCCAACGCAGGGC 65464396 Query 33773 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 33832 ||| |||||||||||||| ||||||||||| || || || ||||| |||||||| | | Sbjct 65464397 CCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCCT 65464456 Query 33833 ttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG-AATGT 33891 || || |||||||| ||||||||||| | ||||| |||||||| ||||| |||| Sbjct 65464457 CTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTTATGT 65464516 Query 33892 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 33951 |||| ||||| || || || || |||||||| | ||||| |||| ||| |||||| | Sbjct 65464517 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTGGC 65464576 Query 33952 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATA 34011 || || || | | |||||||| ||||| |||||||| || ||||| || |||| | Sbjct 65464577 TGAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTCGCAGCAAAGAAAGCCAGGA 65464636 Query 34012 CATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAG 34071 | || |||||||| | | ||||| ||| | || | ||| | | ||||| || | Sbjct 65464637 CGTGAGATATAAAATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGG 65464696 Query 34072 ATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGA 34131 | | || || || || | ||||| || || ||||| || || || ||||| | ||||| Sbjct 65464697 AGAGGTCGACCTCCTCAGCCGTCCAGAAGGAAGCCTCGGCTTTCTTGTACATCTGCCAGA 65464756 Query 34132 TGTCATGATATTGGATTGGGAAA 34154 | ||||| |||| || ||||||| Sbjct 65464757 TATCATGGTATTCGA-TGGGAAA 65464778 >seq26 Length=66536344 Score = 315 bits (348), Expect = 9e-81 Identities = 629/924 (68%), Gaps = 16/924 (2%) Strand=Plus/Plus Query 33240 AAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTTTGG 33296 |||||| |||| || | |||| ||| ||| || | || || || |||| | || Sbjct 31519072 AAGTCAGCATCCAAGGTAAAAGAATTCTCTGCTGAATTTGAAATCACCTCCATCCTCTGA 31519131 Query 33297 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATG 33356 || |||||||| || || || | || || || || ||||| | ||| |||||||||| | Sbjct 31519132 TACTCACCCACTCGCTTCTCAAGGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCACG 31519191 Query 33357 AAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAATCTA 33416 || ||||| ||||| || ||| |||| || | || || | || || | | Sbjct 31519192 AAGTCAAAAGGATTTTCTACTTTGGAAATCTTGCTGAACCCTAGCTCCAGCATAAGCGTG 31519251 Query 33417 TCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACT 33476 || || |||||||| || || ||||| | || ||||| | ||||| || || Sbjct 31519252 TCGGCCACGAATTCGATGTACCGCTTCATGAGGGTGCAGTTCATCCTGATGAGCTTCACA 31519311 Query 33477 GGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTA 33536 || || ||| | || ||||| | || | || || || || | || || | Sbjct 31519312 GGCAGGGCCTCCGTGAGAAACACCTGCTTTATCCTCACTGCGTTGATAATGATTTCTTGT 31519371 Query 33537 ACGGTTTCTTCACTCGG-TGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCGCA 33595 || ||| || ||| | | | || | || | ||||||| || || || | || Sbjct 31519372 ACTCTTTGCTCTGGCGGCTTGCT-TACCAGGTGCCTGAACATCAGGCAGGCAAAGCCACA 31519430 Query 33596 GTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCC 33655 ||| | || ||| ||||| ||||| | || || ||||| || || || ||||| || || Sbjct 31519431 GTGTAAACGCTCATCTCTGCTAATAAGCTCTTTGGAAAATGTAAGGCCAGGCATCAGTCC 31519490 Query 33656 ACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGC 33715 | || || ||||| ||||| || || || || || || |||||||| ||||||| || Sbjct 31519491 CTGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATGTCTTCTACAGC 31519550 Query 33716 AGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGT----ATCCACTTTTGAG 33771 ||||||||| | || ||| |||||||| | | | | | ||||| | | Sbjct 31519551 AGCAAAGGCCACAACTCTTTCTCCATAGGTAGTCTTTTTGTCTCCAAATCCAACGCAGGG 31519610 Query 33772 CCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttt 33831 |||| || |||| |||||| ||||||||||| || || || ||||| |||||||| | Sbjct 31519611 CCCAGTCAGCCTACTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCCC 31519670 Query 33832 tttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGT 33891 | || || |||||||| || || || | ||||| |||||||| ||||| ||| Sbjct 31519671 TCTCTTTGGAATCTTTAAT----GTGTCAATGAGGAGACTGTACATTTCAGAATGTTTGT 31519726 Query 33892 TTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTAC 33951 |||| ||||| || || || || |||||||| | ||||| |||| ||| |||||| | Sbjct 31519727 TTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTGGC 31519786 Query 33952 AAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATA 34011 ||| || || | | |||||||| ||||| ||||||||||||||||| || |||| | Sbjct 31519787 TAAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTGGCTGCAAAGAAAGCCAGGA 31519846 Query 34012 CATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG-ATATCTTTA 34070 | || |||||||| | | ||||| ||| | || |||| | ||| ||||| || Sbjct 31519847 CGTGAGATATAAAATGTCTCTCGTCAGGTTTCAG-CGCTTCCTAGTGTTGAATATCCTTG 31519905 Query 34071 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 34130 || | ||||| || || ||||||| || | ||||| || || || ||||| | |||| Sbjct 31519906 GAGAGGTCCACCTCGTCAGCTGTCCAGAAGAAGGCCTCGGCTTTCTTGTACATCTGCCAG 31519965 Query 34131 ATGTCATGATATTGGATTGGGAAA 34154 || ||||| |||| | ||||||| Sbjct 31519966 ATATCATGGTATT-CAATGGGAAA 31519988 >seq87 Length=2570995 Score = 224 bits (248), Expect = 1e-53 Identities = 345/490 (70%), Gaps = 4/490 (1%) Strand=Plus/Plus Query 33667 GCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAA 33726 |||| ||||| || | || || || || |||||||| |||||||| |||||||||| | Sbjct 1819200 GCCAGAATATTGACACAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCA 1819259 Query 33727 TAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCT 33783 || || |||||||| | | | |||| ||||| | | ||| ||||||| Sbjct 1819260 CAACTCGTTCTCCATAGGTAGCATCTTTGTCCCCAATCCAATGCACGGTCCAGTCGGCCT 1819319 Query 33784 TCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTAT 33843 ||||||| ||||||||||| || || || ||||| | ||||| | | || || || Sbjct 1819320 TCTTTTTCACACAAGGCATTGTCTCAATAGCATTGACAAGATATTCCCTCTCTTTGGAAT 1819379 Query 33844 CTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCA 33903 |||||| || || | || | ||||| |||||||| ||||| |||||||| ||||| | Sbjct 1819380 CTTTAATGTAGGTGACAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAA 1819439 Query 33904 TCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTG 33963 | || || || |||||||| || ||||| |||| ||| |||||| | ||| | || Sbjct 1819440 TTTGGAAGCCATAGAAACAGCTGGCCTCTGTAACCTGAACTTCTTGGCTAAAGCACTCGA 1819499 Query 33964 CTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 34023 | | ||||||||| |||| ||||||||| | |||| || |||| || || ||||| Sbjct 1819500 CCAGATTTTCATTGACTAATCCATCACTCGTCACAAAGAAAGCCAGGACGTGGGATATAA 1819559 Query 34024 AATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTT 34083 ||| | | ||||| ||| | || | ||| | | ||||| || || | ||||| | Sbjct 1819560 AATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACCT 1819619 Query 34084 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATT 34143 | || | |||| || || ||||| || || || ||| | | |||||| ||||| || | Sbjct 1819620 CCTCAGCCATCCAGAAGGAGGCCTCGGCTTTCTTGTAC-TCTGCCAGATATCATGGTACT 1819678 Query 34144 GGATTGGGAA 34153 ||| || || Sbjct 1819679 CGATAGGAAA 1819688 >seq9 Length=86001432 Score = 188 bits (208), Expect = 9e-43 Identities = 400/594 (67%), Gaps = 10/594 (2%) Strand=Plus/Plus Query 33240 AAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTTTGG 33296 |||||| |||| || | ||| ||| ||| || | ||||| || ||||| | || Sbjct 36369702 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 36369761 Query 33297 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATG 33356 || | ||||| || || || || || || || || ||||| | ||| |||||||||||| Sbjct 36369762 TACTTGCCCACGCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 36369821 Query 33357 AAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAATCTA 33416 | ||||||||||| || ||| |||| || | ||||| | || || | || Sbjct 36369822 GAGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAATCCTAGCTCCAGCATAAGCCTG 36369881 Query 33417 TCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACT 33476 || || |||||||| || || ||||||| || | || || ||||| || || Sbjct 36369882 TCCGCCACGAATTCGATGTAGTGCTTCATCAGGGTGCAGCTTATCCCGATGAGCTTCACA 36369941 Query 33477 GGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTA 33536 || || ||| | || ||||| || || || || || || || | || || | Sbjct 36369942 GGCAGGGCCTCCGTGAGAAACTCCTGCTCTATCCTCACTGCGTTGATGATGATTTCTTGT 36370001 Query 33537 ACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAG 33596 || ||| || ||| |||| | || | ||||||| || || || || ||| Sbjct 36370002 ACTCTTTGCTCCGGCGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGCAAAGTCACAG 36370061 Query 33597 TGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCA 33656 || | |||||| ||||| ||||| | ||||| |||||||| || || ||||| || || Sbjct 36370062 TGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAGTCCC 36370121 Query 33657 CGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCA 33716 | || | ||||| ||||| || || || || || || |||||| ||||| | ||| Sbjct 36370122 AGTTTCCTGAGCCAGAATATTGACGCAAAAGAGCCAGA---GAAGATCCCTTCCATAGCA 36370178 Query 33717 GCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCACTTTTGAGCC 33773 |||||||| | || || |||||||| | | | |||| ||||| | ||| Sbjct 36370179 GCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCAATCCAACGCAGGGCC 36370238 Query 33774 CAATCGGCCTTCTTTTT-TACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33826 || || ||||||||||| ||||||||||| || || || ||||| ||||| || Sbjct 36370239 CAGTCAGCCTTCTTTTTCCACACAAGGCATTGTCTCAATAGCATTGAAGAGCTA 36370292 >seq42 Length=9663327 Score = 176 bits (194), Expect = 6e-39 Identities = 341/503 (68%), Gaps = 3/503 (1%) Strand=Plus/Minus Query 33240 AAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTTTGG 33296 |||||| |||| || | ||| ||| ||| || | ||||| || ||||| | || Sbjct 3436142 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 3436083 Query 33297 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATG 33356 || | ||||| || || || || || || || || ||||| | ||| |||||||||||| Sbjct 3436082 TACTTGCCCACGCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 3436023 Query 33357 AAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAATTCAGAAATCAATCTA 33416 | ||||||||||| || ||| |||| || | ||||| | || || | || Sbjct 3436022 GAGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAATCCTAGCTCCAGCATAAGCCTG 3435963 Query 33417 TCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATGAGTTTAACT 33476 || || |||||||| || || ||||||| || | || || ||||| || || Sbjct 3435962 TCCGCCACGAATTCGATGTAGTGCTTCATCAGGGTGCAGCTTATCCCGATGAGCTTCACA 3435903 Query 33477 GGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTTGTTATAATAAATCTA 33536 || || ||| | || ||||| || || || || | || || | || || | Sbjct 3435902 GGCAGGGCCTCCGTGAGAAACTCCTGCTCTATCCTCAAGGCGTTGATAATGATTTCTTGT 3435843 Query 33537 ACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAG 33596 || ||| || ||| |||| | || | ||||||| || || || || ||| Sbjct 3435842 ACTCTTTGCTCCGGCGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGCAAAGTCACAG 3435783 Query 33597 TGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCA 33656 || | |||||| ||||| ||||| | ||||| |||||||| || || ||||| || || Sbjct 3435782 TGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAGTCCC 3435723 Query 33657 CGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCA 33716 || || || ||||| ||||| || || || || || || |||||||| ||||| || ||| Sbjct 3435722 CGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACAGCA 3435663 Query 33717 GCAAAGGCAATAAGTCTCTCTCC 33739 |||||||| | || || ||||| Sbjct 3435662 GCAAAGGCCACAACTCGTTCTCC 3435640 Score = 158 bits (174), Expect = 2e-33 Identities = 141/177 (80%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 33771 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33830 ||||| |||||||||||||| ||||||||||| || || || ||||| |||||||| | Sbjct 3435477 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 3435418 Query 33831 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33890 | || || |||||||| ||||||||||| | ||||| |||||||| ||||| ||| Sbjct 3435417 CTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATG 3435358 Query 33891 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCT 33947 ||||| ||||| || || || || |||||||| | ||||| |||| ||| |||||| Sbjct 3435357 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCT 3435301 Score = 149 bits (164), Expect = 8e-31 Identities = 133/167 (80%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 33771 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33830 ||||| |||||||||||||| ||||||||||| || || || ||||| |||||||| | Sbjct 3436363 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 3436304 Query 33831 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33890 | || || |||||||| ||||||||||| | ||||| |||||||| ||||| ||| Sbjct 3436303 CTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATG 3436244 Query 33891 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 33937 ||||| ||||| || || || || |||||||| | ||||| ||||| Sbjct 3436243 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAAT 3436197 Score = 105 bits (116), Expect = 8e-18 Identities = 105/136 (77%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| ||||| | ||||| |||||||| || || ||||| || || || || | Sbjct 3436661 CCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCT 3436602 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || || |||||||| ||||| || |||||||||| Sbjct 3436601 TGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACAGCAGCAAAGG 3436542 Query 33724 CAATAAGTCTCTCTCC 33739 | | || || ||||| Sbjct 3436541 CCACAACTCGTTCTCC 3436526 Score = 82.4 bits (90), Expect = 1e-10 Identities = 99/134 (74%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 33240 AAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTTTGG 33296 |||||| |||| || | ||| ||| ||| || | ||||| || ||||| | || Sbjct 3438637 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 3438578 Query 33297 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTTTCCATG 33356 || || ||||| || || || || || || || || ||||| | ||| |||||||||||| Sbjct 3438577 TACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 3438518 Query 33357 AAATCAAACGGATT 33370 || ||||||||||| Sbjct 3438517 AAGTCAAACGGATT 3438504 >seq73 Length=3316092 Score = 107 bits (118), Expect = 2e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 2397345 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 2397286 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 || |||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 2397285 GATTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 2397226 Query 62508 CTATTTCTAAGACCGTA 62524 || ||||| | ||| || Sbjct 2397225 CTGTTTCTTATACCATA 2397209 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/193 (70%), Gaps = 6/193 (3%) Strand=Plus/Minus Query 62626 CATATGTATCATATGGTCC---TTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCAC 62682 |||| || ||||| ||||| |||||| ||||| | ||| || || || || || | Sbjct 2394031 CATACGTTTCATAGGGTCCACATTCCTTG---GCTAGGTCACAGCTGGCTTCCAAAGCTC 2393975 Query 62683 CGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAATG 62742 | |||||||| ||||||||||| | ||||| | || ||||| ||||| ||||| | Sbjct 2393974 CATAATAAATAGTTTCAAAGATTTGTTTATTCAATAACTGGGCTTCTGGGCTTTCAAAGG 2393915 Query 62743 GATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTAT 62802 | || | | || || || || || |||| ||||| || ||||| || || || | || Sbjct 2393914 GGTACCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGAT 2393855 Query 62803 GTCTCTTATTAGA 62815 | | ||||| || Sbjct 2393854 GGCGTTTATTTGA 2393842 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 62113 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 62172 |||| ||||| || ||||||||||| |||||| ||| | || || || || ||||| | Sbjct 2400521 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 2400462 Query 62173 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 62232 | | ||| || |||||||| ||||| || || || || || ||||| || | | |||| Sbjct 2400461 TTAAAGACTGGCTTTGATCAATGAAAGCGCCTCTCTCGGCGGCCATCTTGAGAACAGTCT 2400402 Query 62233 TTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 62283 | || | || ||||| | || ||||| | |||| | || || |||| Sbjct 2400401 TCTGAGAGATCTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 2400351 Score = 82.4 bits (90), Expect = 1e-10 Identities = 101/138 (73%), Gaps = 0/138 (0%) Strand=Plus/Minus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||| ||||| |||||||| ||||||||||| || | || ||||| | | || Sbjct 2391265 CTCCACTCGCTTCATGAAGAGATCCGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCG 2391206 Query 63323 ATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCA 63382 || || || || ||||| ||||| || | || |||||| | | || || ||||||| Sbjct 2391205 CTGCTCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAATGCCA 2391146 Query 63383 CGGTTCCAAGTATATGGC 63400 || |||| ||| || || Sbjct 2391145 AGGCTCCAGGTAAATAGC 2391128 >seq20 Length=37156218 Score = 105 bits (116), Expect = 8e-18 Identities = 97/121 (80%), Gaps = 4/121 (3%) Strand=Plus/Plus Query 188489 GTTACTTTCTATGATGCGCGTA--TCGTTATACAAGCTTTCATGTTGACTACTGCAGTGT 188546 |||||||||||||| || || | ||| | |||||||| || ||||||||||||| | Sbjct 2689045 GTTACTTTCTATGA--CGTATACCTGGTTCTGCAAGCTTTTATACTGACTACTGCAGTCT 2689102 Query 188547 TTCTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAG 188606 |||||| ||||| | | ||||||||| ||||||||||||||||| ||| ||| | ||| Sbjct 2689103 TTCTTGGCTTGACTGCCTATACTCTACAGTCAAAGAGAGATTTCAGCAAATTTGGAGCAG 2689162 Query 188607 G 188607 | Sbjct 2689163 G 2689163 Score = 82.4 bits (90), Expect = 1e-10 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 188172 TGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGCAC 188231 ||||| ||||||||||| ||||||||||| | ||||| ||||| || |||||||||||| Sbjct 2676432 TGCTCTTCCATCGAGGATGACTTCAACTACGGCAGCTGCGTGGCCTCGGCCAGCGTGCAC 2676491 Query 188232 ATACGAATGG 188241 || || |||| Sbjct 2676492 ATCCGCATGG 2676501 >seq7 Length=85103860 Score = 104 bits (114), Expect = 3e-17 Identities = 145/202 (72%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 162548 TAGAGAGAGATATAGAAAAGTATATCCAAAAACTTCCTGTTGTGCATTTCTGCAAGAAAA 162607 ||||||| || ||||| |||| |||| | | || ||| | | || ||||| ||||| Sbjct 15914822 TAGAGAGTGAAATAGAGAAGTGCATCCGACAGCTGCCTCTCGGTCACTTCTGTGAGAAAC 15914763 Query 162608 AAGAGGACATCAAGTACGCATGTAGATTCATCAAGGTGTATAAACCTGGTGATGAGACTA 162667 ||||| | || |||||| |||| | ||||||| || | | ||| || |||| | Sbjct 15914762 AAGAGAAGATAAAGTACACATGCAAATTCATCCCAGTCCACAGACCAGGAGATGTGCG-- 15914705 Query 162668 CCTCGACATATGTGTGCGCAATCAAAGTGGAAAGATGCTGCTGTGCTGTGTTTGCGGATT 162727 ||| ||||||||| ||| ||| |||||| |||| ||||||||||||||| || | Sbjct 15914704 -CTC---ATATGTGTGTGCACTCAGAGTGGAGAGATTCTGCTGTGCTGTGTTCGCTGCAG 15914649 Query 162728 GGCCAGAATCATGGTACATGGA 162749 ||| || || ||| || |||| Sbjct 15914648 AGCCTGAGTCCTGGCACGTGGA 15914627 >seq61 Length=4506808 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 33606 TCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 33665 || || || || || | ||| || || || |||||||||||||| ||||| | ||| || Sbjct 586187 TCATCCCTGCTGATGAGTTCATTCGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 586128 Query 33666 AGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCA 33725 ||||| || || | ||| ||||| || || ||||| | ||||| || ||||||||||| Sbjct 586127 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGCC 586068 Query 33726 ATAAGTCTCTCTCC 33739 | | |||||| || Sbjct 586067 ACCACTCTCTCCCC 586054 >seq4671 Length=1285 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 33842 ATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGC 33901 |||||||| ||||||||||| | ||||| |||||||| ||||| |||||||| ||||| Sbjct 1203 ATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGC 1262 Query 33902 CATCTGAAATCCGTAGAAACA 33922 || || || || |||||||| Sbjct 1263 AATTTGGAAGCCATAGAAACA 1283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629767726318800