Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq26 235 5e-57 seq4 235 5e-57 seq87 109 5e-19 seq61 96.9 3e-15 seq42 96.9 3e-15 seq73 86.0 6e-12 >seq26 Length=66536344 Score = 235 bits (260), Expect = 5e-57 Identities = 615/919 (67%), Gaps = 32/919 (3%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAA 11367 ||||||| || ||||| || |||| ||||| | ||||| |||| ||||| || | Sbjct 31519095 ATTCTCTGCTGAATTTGAAATCACCTCCATCCTCTGATACTCACCCACTCGCTTCTCAAG 31519154 Query 11368 AAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATT 11427 || || ||||| ||||||||||| |||| |||| ||| ||||||||| | ||| || Sbjct 31519155 GAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCACGAAGTCAAAAGGATTTTCTACTTT 31519214 Query 11428 GAAGACTTTTTCACAACC-TAACTCTGTTAATAATC-TATCTGCGACGAATTCTATATAC 11485 | | | | || | |||| || ||| | ||| | | || || |||||||| || ||| Sbjct 31519215 GGAAA-TCTTGCTGAACCCTAGCTCCAGCA-TAAGCGTGTCGGCCACGAATTCGATGTAC 31519272 Query 11486 TGAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAAC 11545 | ||| | || ||||| | || || | ||| || | || | || | |||| Sbjct 31519273 CGCTTCATGAGGGTGCAGTTCATCCTGATGAGCTTCACAGGCAGGGCCTCCGTGAGAAAC 31519332 Query 11546 TCCTTTTCTATATTAACCGCATC---AATGATTATCGACGTTATAACTTCCTTAGAT--G 11600 ||| | ||| | || || | ||||||| || || || || ||| | | | Sbjct 31519333 ACCTGCTTTATCCTCACTGCGTTGATAATGATT-TC----TTGTA-CT--CTTTGCTCTG 31519384 Query 11601 GTGGATG---TAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGT 11657 | || | || | || | ||||| | || ||||| |||| ||||||| || | Sbjct 31519385 GCGGCTTGCTTACCAGGTGCCTGAACATCAGGCAGGCAAAGCCACAGTGTAAACGCTCAT 31519444 Query 11658 CTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCC 11717 |||| || || || || || |||||||| | || ||||||| ||| |||| || | || Sbjct 31519445 CTCTGCTAATAAGCTCTTTGGAAAATGTAAGGCCAGGCATCAGTCCCTGTTTCTTGAGCC 31519504 Query 11718 AAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTA 11777 | ||||| | ||||| || ||||| ||||| || | || ||||| ||||| || || | Sbjct 31519505 AGAATATTGACGCAAAAGAGCCAGAGAAGAAGATGTCTTCTACAGCAGCAAAGGCCACAA 31519564 Query 11778 CTCTTTCTCCATA--TA-CCTTGTTG-CTAGATATCCATTTTCTGGCCCAATCAGCTTTC 11833 ||||||||||||| || ||| ||| || | ||||| |||||| ||||| | | Sbjct 31519565 CTCTTTCTCCATAGGTAGTCTTTTTGTCTCCAAATCCAACGCAGGGCCCAGTCAGCCTAC 31519624 Query 11834 TTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATT--TTTTCTATATTAT 11891 ||||| || || |||||| || ||||| || || | || ||| | ||| | || Sbjct 31519625 TTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGAT--ATTCCCTCTCTTTGGAAT 31519682 Query 11892 CTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTA 11951 || ||| |||| || || | | ||| |||||||| ||||| | |||||||| || | Sbjct 31519683 CT-TTA---ATGTGTCAATGAGGAGACTGTACATTTCAGAATGTTTGTTTTCCATGGCAA 31519738 Query 11952 TTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCG 12011 |||| || ||||||||||| || ||||||| | ||| || || ||| | ||| Sbjct 31519739 TTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTGGCTAAAGCGCTCCA 31519798 Query 12012 CTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAA 12071 | | || ||||| || || |||||||| | |||||| || || || | || ||||| Sbjct 31519799 CCAGGTTTTCATTGACTATGCCATCACTGGCTGCAAAGAAAGCCAGGACGTGAGATATAA 31519858 Query 12072 AGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTT 12131 | | | | ||||| | | ||| | | | | ||| || || | || || | Sbjct 31519859 AATGTCTCTCGTCAGGTTTCAGCGCTTCCTAGTGTTGAATATCCTTGGAGAGGTCCACCT 31519918 Query 12132 CTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACT 12191 | ||| | ||||| || ||| | | || || ||||| | |||||||||||| || | Sbjct 31519919 CGTCAGCTGTCCAGAAGAAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTATT 31519978 Query 12192 TAATAGGGAAAATAACGAA 12210 ||| || || | |||||| Sbjct 31519979 CAATGGGAAAGACAACGAA 31519997 >seq4 Length=96435083 Score = 235 bits (260), Expect = 5e-57 Identities = 608/911 (67%), Gaps = 28/911 (3%) Strand=Plus/Plus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAA 11367 ||||||| || ||||| | |||||||||| | ||||| || | ||||| || || Sbjct 65463880 ATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGATACTCGCCCACTCGCTTCTCAAA 65463939 Query 11368 AAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATT 11427 || || ||||| ||||||||||| |||| ||||| ||| ||| ||||| | ||| || Sbjct 65463940 GAAGTTTGTCTTTCCTTCTAGTGAAATATTTTCCATGAAGTCAAATGGATTTTCTACTTT 65463999 Query 11428 GAAGACTTTTTCACAACC-TAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486 ||| | | || | |||| || ||| | | || || || |||||||| || |||| Sbjct 65464000 GAAAA-TCTTGCTGAACCCTAGCTCCAGCATAAGCCTGTCCGCCACGAATTCGATGTACT 65464058 Query 11487 GAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACT 11546 | ||| | || ||||| || || || | ||| || | || | || | ||||| Sbjct 65464059 GCTTCATCAGGGCGCAGTTCATCCCGATGAGCTTCACAGGCAGGGCCTCCGTGAGAAACT 65464118 Query 11547 CCTTTTCTATATTAACCGCATC---AATGATTATCGACGTTATAACTTCCTTAGAT--GG 11601 ||| |||| | || || | ||||||| || || || || ||| | | || Sbjct 65464119 CCTGCTCTAGCCTCACTGCGTTGATAATGATT-TC----TTGTA-CT--CTTTGCTCCGG 65464170 Query 11602 TGGAT---GTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTC 11658 || | ||| | || | ||||| | || ||||| ||| |||||||| || || Sbjct 65464171 CGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGCAAAGCAACAGTGTAAACCCTCATC 65464230 Query 11659 TCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCA 11718 ||| || || || || || ||||| || | || ||||||| ||| ||||| || | ||| Sbjct 65464231 TCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCA 65464290 Query 11719 AAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTAC 11778 ||||| | |||| || ||||| |||| || || |||||||| ||||| || || || Sbjct 65464291 GAATATTGACACAAAGGAGCCAGAGAAGAGGATCCCTTCCACAGCAGCAAAGGCCACAAC 65464350 Query 11779 TCTTTCTCCATA--TACCTTGTTGCTAGAT--ATCCATTTTCTGGCCCAATCAGCTTTCT 11834 || ||||||||| || ||| || | ||||| |||||| || || |||| Sbjct 65464351 TCGTTCTCCATAGGTAGCTTCTTTGTCCCCCAATCCAACGCAGGGCCCAGTCGGCCTTCT 65464410 Query 11835 TTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATT--ATC 11892 |||| || || |||||| || ||||| || || | || ||| ||| | | ||| Sbjct 65464411 TTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGAT--ATTCCCTCTCTTTGGAATC 65464468 Query 11893 TCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGA-ATATTTTCCATAGCTA 11951 | | | || ||||| || | | ||| |||||||| ||||| || |||||||| || | Sbjct 65464469 TTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTTATGTTTTCCATGGCAA 65464528 Query 11952 TTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCG 12011 |||| || ||||||||||| || ||||||| | ||| || || || | ||| Sbjct 65464529 TTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCTTGGCTGAAGCGCTCCA 65464588 Query 12012 CTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAA 12071 | | || ||||| || || |||||||| | ||||| || || || | || ||||| Sbjct 65464589 CCAGGTTTTCATTGACTATGCCATCACTCGCAGCAAAGAAAGCCAGGACGTGAGATATAA 65464648 Query 12072 AGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTT 12131 | | | | ||||| | | ||||| | | | ||| || || | || || | Sbjct 65464649 AATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCGACCT 65464708 Query 12132 CTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACT 12191 | ||| | ||||| || ||| | | || || ||||| | |||||||||||| || | Sbjct 65464709 CCTCAGCCGTCCAGAAGGAAGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTATT 65464768 Query 12192 TAATAGGGAAA 12202 || |||||| Sbjct 65464769 CGAT-GGGAAA 65464778 >seq87 Length=2570995 Score = 109 bits (120), Expect = 5e-19 Identities = 329/503 (65%), Gaps = 14/503 (3%) Strand=Plus/Plus Query 11716 CCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTAC 11775 ||| ||||| | |||| || ||||| ||||| || || || ||||| ||||| | || Sbjct 1819201 CCAGAATATTGACACAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCAC 1819260 Query 11776 TACTCTTTCTCCATA--TACC----TTGTTGCTAGATATCCATTTTCTGGCCCAATCAGC 11829 |||| ||||||||| || | |||| | | ||||| | || ||| || || Sbjct 1819261 AACTCGTTCTCCATAGGTAGCATCTTTGTCCCCA---ATCCAATGCACGGTCCAGTCGGC 1819317 Query 11830 TTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCATTTTTTCTATATT 11889 |||||||| || || |||||| || ||||| || | | || ||| ||| | | Sbjct 1819318 CTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGACAAGAT--ATTCCCTCTCTTTG 1819375 Query 11890 --ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATA 11947 |||| | | || || | || | | ||| |||||||| ||||| || |||||||| Sbjct 1819376 GAATCTTTAATGTAGGTGACAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATG 1819435 Query 11948 GCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTT 12007 || ||||| || ||||||||||| | ||||||| | ||| || || ||| | Sbjct 1819436 GCAATTTGGAAGCCATAGAAACAGCTGGCCTCTGTAACCTGAACTTCTTGGCTAAAGCAC 1819495 Query 12008 TCCGCTAAATTCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTT 12067 || | | ||| ||||| || | |||||||| | |||| || || || | || | Sbjct 1819496 TCGACCAGATTTTCATTGACTAATCCATCACTCGTCACAAAGAAAGCCAGGACGTGGGAT 1819555 Query 12068 ATAAAGTATTTTTCGTCTTTAGTTAATTTATCCCAATCATCTAAATCTTTTGATAAATCT 12127 ||||| | | | ||||| | | ||||| | | | ||| || || | || Sbjct 1819556 ATAAAATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCC 1819615 Query 12128 ACTTCTTCAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGA 12187 || || ||| | |||| || ||| | | || || ||| | | |||||||||||| Sbjct 1819616 ACCTCCTCAGCCATCCAGAAGGAGGCCTCGGCTTTCTTGTAC-TCTGCCAGATATCATGG 1819674 Query 12188 TACTTAATAGGGAAAATAACGAA 12210 |||| ||||| || | || ||| Sbjct 1819675 TACTCGATAGGAAAGACAAGGAA 1819697 >seq61 Length=4506808 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 11652 CTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttt 11711 |||| || || || || |||||||| || || || | ||||||||| | |||| || | Sbjct 586189 CTTCATCCCTGCTGATGAGTTCATTCGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 586130 Query 11712 ttATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATG 11771 | | ||| || |||||||||||||| ||||| ||||| | || ||||| || ||||| | Sbjct 586129 TCAGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGG 586070 Query 11772 CTACTACTCTTTCTCC 11787 | || ||||| || || Sbjct 586069 CCACCACTCTCTCCCC 586054 >seq42 Length=9663327 Score = 96.9 bits (106), Expect = 3e-15 Identities = 130/179 (73%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 11818 GGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCAT 11877 |||||| || || |||||||| || || |||||| || ||||| || || | || || Sbjct 3435478 GGCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGAT--AT 3435421 Query 11878 TTTTTCTATATT--ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGA 11935 | ||| | | |||| | | || ||||| || | | ||| |||||||| ||||| Sbjct 3435420 TCCCTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGT 3435361 Query 11936 ATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAACACTGTACATC 11994 || |||||||| || ||||| || ||||||||||| || ||||||| | ||| || || Sbjct 3435360 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTC 3435302 Score = 96.9 bits (106), Expect = 3e-15 Identities = 122/166 (73%), Gaps = 4/166 (2%) Strand=Plus/Minus Query 11818 GGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTTAAATAAATGCAT 11877 |||||| || || |||||||| || || |||||| || ||||| || || | || || Sbjct 3436364 GGCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGAT--AT 3436307 Query 11878 TTTTTCTATATT--ATCTCTTACATATGTATCTATTAATAAACTATACATTTCTGAATGA 11935 | ||| | | |||| | | || ||||| || | | ||| |||||||| ||||| Sbjct 3436306 TCCCTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGT 3436247 Query 11936 ATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTG 11981 || |||||||| || ||||| || ||||||||||| || ||||||| Sbjct 3436246 ATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTG 3436201 Score = 82.4 bits (90), Expect = 7e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAA 11367 ||||||| || ||||| | |||||||||| | ||||| || | ||||| || || Sbjct 3438614 ATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGATACTCGCCCACTCGCTTCTCAAA 3438555 Query 11368 AAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACATT 11427 || || ||||| ||||||||||| |||| ||||| ||| ||| ||||| | ||| || Sbjct 3438554 GAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATGAAGTCAAACGGATTTTCTACTTT 3438495 Query 11428 GAA 11430 ||| Sbjct 3438494 GAA 3438492 >seq73 Length=3316092 Score = 86.0 bits (94), Expect = 6e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || ||||| || | |||||||| ||||| | ||||| || || || | || Sbjct 2384997 GTCCCAGCGTTGAAGAGAGTAGGAGAGGCATGAGTAAACCACTTCTCAGAAAGCAGGTTG 2384938 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 || ||||| ||| || |||| ||||| | |||||| || | |||||||||||| | | Sbjct 2384937 TAGGTTTCAATTGCAGCATCGATATCTTCTTTGTGAATCCCCACAGATACCCTCATCAAC 2384878 Query 38533 ATATGTTGTGGTCTTTC 38549 ||||| ||||||||||| Sbjct 2384877 ATATGCTGTGGTCTTTC 2384861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468487698692400