Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq4 374 1e-98 seq26 343 2e-89 seq87 242 5e-59 seq9 194 2e-44 seq42 168 9e-37 seq20 138 1e-27 seq73 113 6e-20 seq61 98.7 1e-15 seq7 91.5 2e-13 seq4671 84.2 3e-11 >seq4 Length=96435083 Score = 374 bits (414), Expect = 1e-98 Identities = 621/889 (70%), Gaps = 17/889 (2%) Strand=Plus/Plus Query 35852 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 35911 ||||| || ||||| | || || || ||||| || || || || || || || || ||| Sbjct 65463896 GACATCACCCCCATCCTCTGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCT 65463955 Query 35912 TCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAAT 35971 |||| ||| |||||||||||||| || |||||||| || || |||| || | || Sbjct 65463956 TCTAGTGAAATATTTTCCATGAAGTCAAATGGATTTTCTACTTTGAAAATCTTGCTGAAC 65464015 Query 35972 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 36031 || | || || | || || || || ||||| || || ||||||| | || Sbjct 65464016 CCTAGCTCCAGCATAAGCCTGTCCGCCACGAATTCGATGTACTGCTTCATCAGGGCGCAG 65464075 Query 36032 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 36091 ||||| || || || || || || || ||| | || ||||| || || || | || Sbjct 65464076 TTCATCCCGATGAGCTTCACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACT 65464135 Query 36092 GCGTCTGTTATAATAGATAT----TACTGTTTCTTCACTCGG--TGGATACAATAAATGT 36145 |||| | ||||| ||| | |||| ||| || ||| || ||| | || Sbjct 65464136 GCGT---TGATAAT-GATTTCTTGTACTCTTTGCTCCGGCGGCTTGTGTACCAGG--TGC 65464189 Query 36146 TTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTG 36205 | ||||||| || || || ||||||| |||||| ||||| ||||| | |||||| Sbjct 65464190 CTGAACATCAGGCAGGCAAAGCAACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTG 65464249 Query 36206 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 36265 |||||||| || || ||||| || || || || || ||||| ||||| ||| |||| || Sbjct 65464250 GAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGACACAAAGGAG 65464309 Query 36266 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCG 36322 ||||| |||| || ||||| || || |||||||| | || || |||||||| | | Sbjct 65464310 CCAGAGAAGAGGATCCCTTCCACAGCAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCT 65464369 Query 36323 GCACTGTCATGTA-TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGT 36381 | |||| | |||| | ||||| |||||||||||||| |||||||||||||| Sbjct 65464370 TCTTTGTCCCCCAATCCAACGCAGGGCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGT 65464429 Query 36382 CTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAA 36441 ||| |||||||| |||||||| | | || || |||||||| || ||||| || | Sbjct 65464430 CTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAATCTTTAATGTAAGTATCGATGAG 65464489 Query 36442 AAGACTATACATTTCCGAATG-AATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATC 36500 ||||| |||||||| ||||| |||||||| ||||| ||||| || || |||||||| | Sbjct 65464490 GAGACTGTACATTTCAGAATGTTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGC 65464549 Query 36501 TAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTC 36560 ||||| |||| ||| |||||| | || || || | | |||||||| ||||| | Sbjct 65464550 GGGCCTCTGTAACCTGAACTTCTTGGCTGAAGCGCTCCACCAGGTTTTCATTGACTATGC 65464609 Query 36561 CGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTA 36620 | ||||| || ||||| || |||| || || |||||||| | | |||| ||| | | Sbjct 65464610 CATCACTCGCAGCAAAGAAAGCCAGGACGTGAGATATAAAATGTCTCTCGTCGGGTTTCA 65464669 Query 36621 GTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATG 36680 | | ||| | | ||||| || || | || || || || | ||||| || || | Sbjct 65464670 GCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCGACCTCCTCAGCCGTCCAGAAGGAAG 65464729 Query 36681 CCTCTGCCTTTTTATACATATTCCAGATGTCATGATATTGAATTGGAAA 36729 |||| || || || ||||| | |||||| ||||| |||| || ||||| Sbjct 65464730 CCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTATTCGATGGGAAA 65464778 >seq26 Length=66536344 Score = 343 bits (380), Expect = 2e-89 Identities = 646/940 (69%), Gaps = 31/940 (3%) Strand=Plus/Plus Query 35816 AAATCAACATCTAGAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTTTGG 35872 || ||| |||| | | |||| ||| ||| || | || || || |||| | || Sbjct 31519072 AAGTCAGCATCCAAGGTAAAAGAATTCTCTGCTGAATTTGAAATCACCTCCATCCTCTGA 31519131 Query 35873 TATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTTTCCATG 35932 || |||||||| || || || | || || || || ||||||| ||| |||||||||| | Sbjct 31519132 TACTCACCCACTCGCTTCTCAAGGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCACG 31519191 Query 35933 AAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTA 35992 || || || ||||| || || |||| || | || || | || || | | Sbjct 31519192 AAGTCAAAAGGATTTTCTACTTTGGAAATCTTGCTGAACCCTAGCTCCAGCATAAGCGTG 31519251 Query 35993 TCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 36052 || || || ||||| || || ||||| | || ||||| | || || || || Sbjct 31519252 TCGGCCACGAATTCGATGTACCGCTTCATGAGGGTGCAGTTCATCCTGATGAGCTTCACA 31519311 Query 36053 GGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATAT- 36111 || || ||| | || ||||| | || | || || |||| | ||||| ||| | Sbjct 31519312 GGCAGGGCCTCCGTGAGAAACACCTGCTTTATCCTCACTGCGT---TGATAAT-GATTTC 31519367 Query 36112 ---TACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGCGAAA 36166 |||| ||| || ||| || ||| | || | ||||||| || || || Sbjct 31519368 TTGTACTCTTTGCTCTGGCGGCTTGCTTACCAGG--TGCCTGAACATCAGGCAGGCAAAG 31519425 Query 36167 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 36226 | ||||||| || ||| ||||| ||||| | || |||||||| || || || ||||| Sbjct 31519426 CCACAGTGTAAACGCTCATCTCTGCTAATAAGCTCTTTGGAAAATGTAAGGCCAGGCATC 31519485 Query 36227 AGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCT 36286 || || | || || ||||| ||||| |||||||| || ||||| ||||| || ||||| Sbjct 31519486 AGTCCCTGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATGTCTTCT 31519545 Query 36287 ACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT-GTATCCACTTTTG 36345 || || |||||||| | || ||| |||||||| || | | | | || |||| | Sbjct 31519546 ACAGCAGCAAAGGCCACAACTCTTTCTCCATA---GGTAGTCTTTTTGTCTCCAAATCCA 31519602 Query 36346 A------GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAG 36399 | ||||| || |||| |||||| ||||||||||||||||| |||||||| ||||| Sbjct 31519603 ACGCAGGGCCCAGTCAGCCTACTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAG 31519662 Query 36400 ATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGA 36459 ||| | | || || |||||||| ||| ||||| | ||||| |||||||| || Sbjct 31519663 ATATTCCCTCTCTTTGGAATCTTTAA----TGTGTCAATGAGGAGACTGTACATTTCAGA 31519718 Query 36460 ATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTAC 36519 ||| ||||||| ||||| ||||| || || |||||||| | ||||| |||| ||| || Sbjct 31519719 ATGTTTGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAAC 31519778 Query 36520 TTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 36579 |||| | ||| || || | | |||||||| ||||| || |||||||||||||| || Sbjct 31519779 TTCTTGGCTAAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTGGCTGCAAAGAA 31519838 Query 36580 CGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTG-A 36638 |||| || || |||||||| | | |||| ||| | || |||| | ||| | Sbjct 31519839 AGCCAGGACGTGAGATATAAAATGTCTCTCGTCAGGTTTCAG-CGCTTCCTAGTGTTGAA 31519897 Query 36639 TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 36698 |||| || || | ||||| || || ||||||| || | ||||| || || || |||| Sbjct 31519898 TATCCTTGGAGAGGTCCACCTCGTCAGCTGTCCAGAAGAAGGCCTCGGCTTTCTTGTACA 31519957 Query 36699 TATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 | | |||||| ||||| |||| ||| ||||| | ||| || Sbjct 31519958 TCTGCCAGATATCATGGTATTCAATGGGAAAGACAACGAA 31519997 >seq87 Length=2570995 Score = 242 bits (268), Expect = 5e-59 Identities = 349/490 (71%), Gaps = 4/490 (1%) Strand=Plus/Plus Query 36243 GCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAA 36302 |||| ||||| ||| |||| || ||||| ||||| || |||||||| || ||||||| | Sbjct 1819200 GCCAGAATATTGACACAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCA 1819259 Query 36303 TAAGTCTCTCTCCATAACCGGCAC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCT 36359 || || |||||||| ||| |||| ||||| | | ||| ||||||| Sbjct 1819260 CAACTCGTTCTCCATAGGTAGCATCTTTGTCCCCAATCCAATGCACGGTCCAGTCGGCCT 1819319 Query 36360 TCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTAT 36419 ||||||| ||||||||||||||||| |||||||| | ||||| | | || || || Sbjct 1819320 TCTTTTTCACACAAGGCATTGTCTCAATAGCATTGACAAGATATTCCCTCTCTTTGGAAT 1819379 Query 36420 CTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCA 36479 |||||| || || |||| | ||||| |||||||| ||||| |||||||| ||||| | Sbjct 1819380 CTTTAATGTAGGTGACAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAA 1819439 Query 36480 TTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTG 36539 |||| || || |||||||| || ||||| |||| ||| |||||| | ||| | || Sbjct 1819440 TTTGGAAGCCATAGAAACAGCTGGCCTCTGTAACCTGAACTTCTTGGCTAAAGCACTCGA 1819499 Query 36540 CTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 36599 | | ||||||||| |||| ||| ||||| | |||| || |||| || || ||||| Sbjct 1819500 CCAGATTTTCATTGACTAATCCATCACTCGTCACAAAGAAAGCCAGGACGTGGGATATAA 1819559 Query 36600 AATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTT 36659 ||| | | |||| ||| | || | ||| | | ||||| || || | ||||| | Sbjct 1819560 AATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACCT 1819619 Query 36660 CTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATATT 36719 | || | |||| || || ||||| || || || ||| | | |||||| ||||| || | Sbjct 1819620 CCTCAGCCATCCAGAAGGAGGCCTCGGCTTTCTTGTAC-TCTGCCAGATATCATGGTACT 1819678 Query 36720 GAATTGGAAA 36729 || ||||| Sbjct 1819679 CGATAGGAAA 1819688 >seq9 Length=86001432 Score = 194 bits (214), Expect = 2e-44 Identities = 380/557 (68%), Gaps = 11/557 (2%) Strand=Plus/Plus Query 35852 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 35911 ||||| || ||||| | || || | ||||| || || || || || || || || ||| Sbjct 36369741 GACATCACCCCCATCCTCTGATACTTGCCCACGCGCTTCTCAAAGAAGTTTGTCTTCCCT 36369800 Query 35912 TCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAAT 35971 |||| ||| |||||||||||| | || || ||||| || || |||| || | ||| Sbjct 36369801 TCTAGTGAAATATTTTCCATGGAGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAAT 36369860 Query 35972 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 36031 || | || || | || || || || ||||| || || ||||||| || Sbjct 36369861 CCTAGCTCCAGCATAAGCCTGTCCGCCACGAATTCGATGTAGTGCTTCATCAGGGTGCAG 36369920 Query 36032 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 36091 | || || || || || || || || ||| | || ||||| || || || || || Sbjct 36369921 CTTATCCCGATGAGCTTCACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTATCCTCACT 36369980 Query 36092 GCGTCTGTTATAATAGATATTACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAA 36149 |||| | || || | |||| ||| || ||| || ||| | || | | Sbjct 36369981 GCGTTGATGATGATTTCTTGTACTCTTTGCTCCGGCGGCTTGTGTACCAGG--TGCCTGA 36370038 Query 36150 ACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAA 36209 |||||| || || || || ||||||| |||||| ||||| ||||| | |||||||||| Sbjct 36370039 ACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAA 36370098 Query 36210 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAG 36269 |||| || || ||||| || || | || | ||||| ||||| |||||||| || |||| Sbjct 36370099 ACGTAAGGCCAGGCATCAGTCCCAGTTTCCTGAGCCAGAATATTGACGCAAAAGAGCCAG 36370158 Query 36270 AAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCAC 36326 |||| || ||||| | || |||||||| | || || |||||||| | | | Sbjct 36370159 ---AGAAGATCCCTTCCATAGCAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTT 36370215 Query 36327 TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTT-TACACAAGGCATTGTCTCT 36385 |||| ||||| | ||||| || ||||||||||| ||||||||||||||||| Sbjct 36370216 TGTCCCCAATCCAACGCAGGGCCCAGTCAGCCTTCTTTTTCCACACAAGGCATTGTCTCA 36370275 Query 36386 ATAGCATTAAAGAGATA 36402 |||||||| ||||| || Sbjct 36370276 ATAGCATTGAAGAGCTA 36370292 >seq42 Length=9663327 Score = 168 bits (186), Expect = 9e-37 Identities = 322/470 (69%), Gaps = 12/470 (3%) Strand=Plus/Minus Query 35852 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 35911 ||||| || ||||| | || || | ||||| || || || || || || || || ||| Sbjct 3436103 GACATCACCCCCATCCTCTGATACTTGCCCACGCGCTTCTCAAAGAAGTTTGTCTTCCCT 3436044 Query 35912 TCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAAT 35971 |||| ||| |||||||||||| | || || ||||| || || |||| || | ||| Sbjct 3436043 TCTAGTGAAATATTTTCCATGGAGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAAT 3435984 Query 35972 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAA 36031 || | || || | || || || || ||||| || || ||||||| || Sbjct 3435983 CCTAGCTCCAGCATAAGCCTGTCCGCCACGAATTCGATGTAGTGCTTCATCAGGGTGCAG 3435924 Query 36032 TTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACC 36091 | || || || || || || || || ||| | || ||||| || || || || | Sbjct 3435923 CTTATCCCGATGAGCTTCACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTATCCTCAAG 3435864 Query 36092 GCGTCTGTTATAATAGATAT----TACTGTTTCTTCACTCGG--TGGATACAATAAATGT 36145 |||| | ||||| ||| | |||| ||| || ||| || ||| | || Sbjct 3435863 GCGT---TGATAAT-GATTTCTTGTACTCTTTGCTCCGGCGGCTTGTGTACCAGG--TGC 3435810 Query 36146 TTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTG 36205 | ||||||| || || || || ||||||| |||||| ||||| ||||| | |||||| Sbjct 3435809 CTGAACATCAGGCAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTG 3435750 Query 36206 GAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGAT 36265 |||||||| || || ||||| || || || || || ||||| ||||| |||||||| || Sbjct 3435749 GAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGACGCAAAAGAG 3435690 Query 36266 CCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCC 36315 ||||| ||||| || ||||| || || |||||||| | || || ||||| Sbjct 3435689 CCAGAGAAGAAGATCCCTTCCACAGCAGCAAAGGCCACAACTCGTTCTCC 3435640 Score = 167 bits (184), Expect = 3e-36 Identities = 143/177 (81%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 36347 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 36406 ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| | Sbjct 3435477 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 3435418 Query 36407 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 36466 | || || |||||||| || ||||| || | ||||| |||||||| ||||| ||| Sbjct 3435417 CTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATG 3435358 Query 36467 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCT 36523 ||||| ||||| ||||| || || |||||||| | ||||| |||| ||| |||||| Sbjct 3435357 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCT 3435301 Score = 158 bits (174), Expect = 2e-33 Identities = 135/167 (81%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 36347 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 36406 ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| | Sbjct 3436363 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 3436304 Query 36407 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 36466 | || || |||||||| || ||||| || | ||||| |||||||| ||||| ||| Sbjct 3436303 CTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATG 3436244 Query 36467 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAAT 36513 ||||| ||||| ||||| || || |||||||| | ||||| ||||| Sbjct 3436243 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAAT 3436197 Score = 114 bits (126), Expect = 2e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| ||||| | |||||||||||||| || || ||||| || || || || | Sbjct 3436661 CCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCT 3436602 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| |||||||| || ||||| ||||| || ||||| || || ||||||| Sbjct 3436601 TGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACAGCAGCAAAGG 3436542 Query 36300 CAATAAGTCTCTCTCC 36315 | | || || ||||| Sbjct 3436541 CCACAACTCGTTCTCC 3436526 >seq20 Length=37156218 Score = 138 bits (152), Expect = 1e-27 Identities = 102/119 (86%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||||||||||||||| ||||||||||| ||||||| ||||| Sbjct 2689163 CCTGCTCCAAATTTGCTGAAATCTCTCTTTGACTGTAGAGTATAGGCAGTCAAGCCAAGA 2689104 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 || |||||||||||||| || |||||||||| ||| | | || |||||||||||||| Sbjct 2689103 AAGACTGCAGTAGTCAGTATAAAAGCTTGCAGAACCAGGTATACGTCATAGAAAGTAAC 2689045 Score = 120 bits (132), Expect = 4e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 9227 TTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATTGATGATATC 9286 ||| || ||| || | |||||| || | | | ||| |||| |||||| ||||| || || Sbjct 2692382 TTACTTTTTACTAACTGCTTCCAGAAACCGCAGCAGGTGCAGGAACAGGTTGATAATGTC 2692323 Query 9287 CAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATGTATTAGTGA 9346 |||||||| | |||| | |||| |||||| ||||| || || ||||| | || |||| Sbjct 2692322 CAAGTAGAGACTGATGGCAGCTAGCACATACTCTTCGGGAGACAGCTTGTACATCAGTGC 2692263 Query 9347 GTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGACAGGACCAG 9406 ||| ||||||||||| || || || ||||| | ||| || || | || | || ||||| Sbjct 2692262 GTGTGTGTCATAGATGATAAAGCCACAGAAAAGAAGAGCGCCTAGAGACGCCAAGACCAA 2692203 Query 9407 CTCCACTGTTTCACTTTGCACAAA 9430 || || |||||| || | ||| Sbjct 2692202 TTCTACCACTTCACTATGGAAAAA 2692179 >seq73 Length=3316092 Score = 113 bits (124), Expect = 6e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 2397345 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 2397286 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 || |||||||| |||| ||| ||||||||||| ||||| ||||| || || | | |||| Sbjct 2397285 GATTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 2397226 Query 65301 CTATTTCTAAGACCGTA 65317 || ||||| | ||| || Sbjct 2397225 CTGTTTCTTATACCATA 2397209 Score = 93.3 bits (102), Expect = 6e-14 Identities = 120/166 (72%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 66799 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTATAA 66858 |||| || | ||| |||||||||||||| | || || || || || || || |||| | Sbjct 2379301 CACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCTAAGA 2379242 Query 66859 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 66918 | ||||| || || || | |||||| | || || ||| | || || |||| ||| |||| Sbjct 2379241 TAGCATAGTCAGGGTGCTTTGTAGTCAAGGTTGCGGCTGTCTCAGCAGCCAAAGTATCCA 2379182 Query 66919 ATTCTACCGTTGTTACTCCATTATATATTCCTTGGATAACCTTCAT 66964 ||| || || || ||||| | || | |||||||| || ||||| Sbjct 2379181 GTTCCACTGTGGTGACTCCGCTGTACAGGCCTTGGATTACTTTCAT 2379136 Score = 87.8 bits (96), Expect = 2e-12 Identities = 122/171 (71%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 64906 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGGATCTGCTATATGGATAT 64965 |||| ||||| || ||||||||||| |||||| ||| | || || || || ||||| | Sbjct 2400521 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 2400462 Query 64966 TCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 65025 | | ||| || |||||||| ||||| || || || || || ||||| || | | |||| Sbjct 2400461 TTAAAGACTGGCTTTGATCAATGAAAGCGCCTCTCTCGGCGGCCATCTTGAGAACAGTCT 2400402 Query 65026 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 65076 | || | || ||||| | || ||||| | |||| | || || |||| Sbjct 2400401 TCTGAGAGATCTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 2400351 >seq61 Length=4506808 Score = 98.7 bits (108), Expect = 1e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 36182 TCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 36241 || || || || || | ||| || || || |||||||||||||| ||||| | ||| || Sbjct 586187 TCATCCCTGCTGATGAGTTCATTCGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 586128 Query 36242 AGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCA 36301 ||||| || || | |||||||| ||||| ||||||| ||||| || || |||||||| Sbjct 586127 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGCC 586068 Query 36302 ATAAGTCTCTCTCC 36315 | | |||||| || Sbjct 586067 ACCACTCTCTCCCC 586054 >seq7 Length=85103860 Score = 91.5 bits (100), Expect = 2e-13 Identities = 168/244 (69%), Gaps = 12/244 (5%) Strand=Plus/Minus Query 167304 TAGAGAATGAGATAGAAAAGCGTATCAGACGACTTCATGTTGTACATTTCTGTGAGAAAA 167363 |||||| ||| ||||| ||| | ||| ||| || | | | | || |||||||||||| Sbjct 15914822 TAGAGAGTGAAATAGAGAAGTGCATCCGACAGCTGCCTCTCGGTCACTTCTGTGAGAAAC 15914763 Query 167364 AAGAGGATATCAAATACGCATGTAGATTCATCAAGGTATATAAACCTGGGGAGGAGACTA 167423 ||||| | || || ||| |||| | ||||||| || | | ||| |||||| Sbjct 15914762 AAGAGAAGATAAAGTACACATGCAAATTCATCCCAGTCCACAGACC-----AGGAGATGT 15914708 Query 167424 CCTCGACATACGTGTGCGCTATCAAAGTGGAAAGATGTTGCTGTGCTGTGTT---TACAG 167480 | | |||| ||||| || ||| |||||| |||| |||||||||||||| | ||| Sbjct 15914707 GCGC-TCATATGTGTGTGCACTCAGAGTGGAGAGATTCTGCTGTGCTGTGTTCGCTGCAG 15914649 Query 167481 ATTGGCCAGAATCATGGTATATGGATACTAGTGGTATCAAGAAGTATTCTCCAGATGAAT 167540 | ||| || || ||| | |||| || || |||||| || | | |||| |||| Sbjct 15914648 A---GCCTGAGTCCTGGCACGTGGAAGACAGCTGTGTCAAGAGGTTTACCTCAGAGGAAT 15914592 Query 167541 GGGT 167544 |||| Sbjct 15914591 GGGT 15914588 >seq4671 Length=1285 Score = 84.2 bits (92), Expect = 3e-11 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 36347 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATA 36402 ||||| |||||||||||||| ||||||||||||||||| |||||||| |||||||| Sbjct 34 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATA 89 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658120680941400