Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq26 324 1e-83 seq8 181 9e-41 seq22 138 1e-27 seq13 109 5e-19 seq46 105 6e-18 >seq26 Length=66536344 Score = 324 bits (358), Expect = 1e-83 Identities = 509/726 (70%), Gaps = 2/726 (0%) Strand=Plus/Plus Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972 ||||||| |||||| || | || || ||||| || || || ||||||||||| Sbjct 25929507 AGCTGAATTTTCAGGGGCTCGATATGATTCAGGTAAATATGTGCATCTCCCAAGGTGTGG 25929566 Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAG 21032 ||||| || || || | ||||| ||| ||| || |||| || || || ||||| ||| Sbjct 25929567 ACAAAATCCCCTGGCTTTAGGCCTGTGGTGTGTGCAATCATGTAGGTAAGCAGGGCATAG 25929626 Query 21033 CTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAG 21092 ||||| ||||| || || || || |||||||| || | ||||||||||| |||||||| Sbjct 25929627 CTGGCAATGTTGAAGGGCACACCCAGGCCCATATCTCCCGACCTCTGGTAGAGCTGGCAA 25929686 Query 21093 GACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATC 21152 ||||||||||| || || || || ||||| | | || |||||||| || |||||| Sbjct 25929687 GACAGCTCCCCATTCGCTACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATC 25929746 Query 21153 CGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCGCCTG 21212 | | || || |||||||| || ||||| | ||| | | || | || | | Sbjct 25929747 AGGGGAAGATCTTTTGGGTTCCAGGCACACATGATGATTCTTCTGTCATCAGGGCTGGTT 25929806 Query 21213 TTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGCGTCG 21272 || || || | ||| | |||||||||| || || |||||| ||| | | || Sbjct 25929807 TTGATGGTGTCAATCACTTTTTGCAGCTGGTCTACTCCTTGACCCGAGTAATCTGATTCC 25929866 Query 21273 GCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCG 21332 | |||| || || |||||||||||||||||||| || || || || |||||||| Sbjct 25929867 ATATCTTTGTAGTCTGCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGATCC 25929926 Query 21333 CCCTCGCGGCGGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTC 21391 || || | || | ||| ||| | || | ||| ||| | |||||||| | || || Sbjct 25929927 CCTTCCTGTCGTGCAGAGAATCCCAG-GCTGTCCAGAAAATCTCGGGACCCATTGGCATC 25929985 Query 21392 CCAAATTTTTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCA 21451 ||| ||| | || || | |||||||| | | | ||||| ||| |||||||||| Sbjct 25929986 CCAGATTCTCACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGGATCCCTTGATAAACCA 25930045 Query 21452 CAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTC 21511 |||||| ||||||| |||||| |||| ||||| | |||||| || | ||||||||| || Sbjct 25930046 CAGCAATTCCTCCAAAACGCCCTTCCAGAACACTCGTTTGGTTGTGAGCAGAGGAAATTC 25930105 Query 21512 GTCCCTGAGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCT 21571 || || ||||| |||| |||| | |||||||| ||| |||||| |||||| | Sbjct 25930106 ATCTCTCAGGTTGTATCTCACCTGCATGCCGAACACCGACAAGGTGCCGGTGCCCGTGCG 25930165 Query 21572 GTCCTCCCTCTGCACGCCGTGTTTAATAATTAAATCCAGGTGCGCCAAGTACTGCAGCTC 21631 ||||||| ||| | ||| ||||| |||| ||| ||| ||||||||||| Sbjct 25930166 GTCCTCCTTCTTGAAACCGCAGCGCATAATGTGCTCCACCTGCCCCAGATACTGCAGCTC 25930225 Query 21632 GCCGTG 21637 ||||| Sbjct 25930226 CCCGTG 25930231 >seq8 Length=88571779 Score = 181 bits (200), Expect = 9e-41 Identities = 224/304 (74%), Gaps = 2/304 (1%) Strand=Plus/Plus Query 21280 TGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGC 21339 |||| || || |||||||||||||||||||| || || || || |||||||| || || Sbjct 15948550 TGTAGTCTGCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGATCCCCTTCCT 15948609 Query 21340 GGCGGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATT 21398 | || | ||| ||| | || | ||| ||| | |||||||| | || ||||| ||| Sbjct 15948610 GTCGTGCAGAGAATCCCAG-GCTGTCCAGAAAATCTCGGGACCCATTGGCATCCCAGATT 15948668 Query 21399 TTTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAAC 21458 | || || | |||||||| | | | ||||| ||| |||||||||||||||| Sbjct 15948669 CTCACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGGATCCCTTGATAAACCACAGCAAT 15948728 Query 21459 TCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTG 21518 ||||||| |||||| |||| ||||| | |||||| || | ||||||||| || || || Sbjct 15948729 TCCTCCAAAACGCCCTTCCAGAACACTCGTTTGGTTGTGAGCAGAGGAAATTCATCTCTC 15948788 Query 21519 AGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCC 21578 ||||| |||| |||| | |||||||| ||| |||||| |||||| | ||||||| Sbjct 15948789 AGGTTGTATCTCACCTGCATGCCGAACACCGACAAGGTGCCGGTGCCCGTGCGGTCCTCC 15948848 Query 21579 CTCT 21582 ||| Sbjct 15948849 TTCT 15948852 Score = 127 bits (140), Expect = 2e-24 Identities = 138/183 (75%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 ||||| |||| ||| || |||| || || || ||||| |||||||| ||||| || || Sbjct 15942881 AGGCCTGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGC 15942940 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || || |||||||| || | ||||||||||| |||||||||||||||||||| || Sbjct 15942941 ACACCCAGGCCCATATCTCCCGACCTCTGGTAGAGCTGGCAGGACAGCTCCCCATTCGCT 15943000 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGG 21170 || || || ||||| | | || |||||||| || |||||| | | || || | |||| Sbjct 15943001 ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTGAGGGG 15943060 Query 21171 TTC 21173 || Sbjct 15943061 GTC 15943063 >seq22 Length=61813736 Score = 138 bits (152), Expect = 1e-27 Identities = 212/300 (71%), Gaps = 2/300 (1%) Strand=Plus/Plus Query 21280 TGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAGATCGCCCTCGC 21339 |||| || || | |||||||||||||||||| || || || || ||||| || || || Sbjct 17833927 TGTAGTCTGCTCAAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTCCCCTTCCT 17833986 Query 21340 GGCGGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATT 21398 | || | ||| ||| || | ||| ||| | |||||||| | || ||||| ||| Sbjct 17833987 GTCGTGCAGAGAATCCCAT-GCTGTCCAGAAAAACTCGGGACCCATTGGCATCCCAGATT 17834045 Query 21399 TTTACGCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATAAACCACAGCAAC 21458 | || || | |||||||| | | | ||| | || ||||||||||||||||| Sbjct 17834046 CTCACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGCATCCTTTGATAAACCACAGCAAC 17834105 Query 21459 TCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGAAACTCGTCCCTG 21518 |||| || || ||| || | ||||| | |||||| || | ||||| ||| || || || Sbjct 17834106 TCCTTCAAAACACCCTTCTAGAACACTCGTTTGGTTGTGAGCAGAGAAAATTCATCTCTC 17834165 Query 21519 AGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCCGTCCTGTCCTCC 21578 ||||| ||| | ||||| | || |||| ||| |||||| | |||||| ||||||| Sbjct 17834166 AGGTTGTATGGTGCCTGCATGCCTAACATCGACAAGGTGCCGATGCCCGTGTGGTCCTCC 17834225 >seq13 Length=46045664 Score = 109 bits (120), Expect = 5e-19 Identities = 134/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Minus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 ||||| |||| ||| || |||| || || || ||||| |||||||| ||||| || || Sbjct 164538 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCAATGTTGAAGGGC 164479 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || || |||||||| | | ||||||||||| |||||||| |||||||||| || Sbjct 164478 ACACCCAGGCCCATAACTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCTATTCGCT 164419 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGG 21170 || || || || || | | || |||||||| || |||||| | | || || | |||| Sbjct 164418 ACATAGAATTGGCAGAGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTGAGGGG 164359 Query 21171 TTC 21173 || Sbjct 164358 GTC 164356 >seq46 Length=7398006 Score = 105 bits (116), Expect = 6e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 20991 AGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACGGG 21050 ||||| ||| ||| || |||| || || || ||||| ||| |||| ||||| || || Sbjct 7346706 AGGCCTATGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGATGGCAATGTTGAAGGGC 7346765 Query 21051 ACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAGCC 21110 || || |||||||| || | ||||||||||| |||||||| ||||||||||| | Sbjct 7346766 ACGCCCAGGCCCATATCTCCTGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCACT 7346825 Query 21111 ACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGG 21170 || || || ||||| | | || ||||| || || |||||| | | || || | |||| Sbjct 7346826 ACATAGAATTGACAGAGGGCATGGCAAGGGGGCAGTGCCATCAGGGGAAGATCTGAGGGG 7346885 Query 21171 TTC 21173 || Sbjct 7346886 GTC 7346888 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427742972350800