Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq42 141 7e-29 seq4 129 4e-25 seq26 123 2e-23 seq9 122 6e-23 >seq42 Length=9663327 Score = 141 bits (156), Expect = 7e-29 Identities = 137/176 (78%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| ||||| ||||| || | || ||||| || |||||| | |||||||||| Sbjct 3435653 TGGCCTTTGCTGCTGTGGAAGGGATCTTCTTCTCTGGCTCTTTTGCGTCAATATTCTGGC 3435712 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | |||||||| || ||||| || | |||||||||||||| | |||||| | || | Sbjct 3435713 TCAAGAAACGGGGACTGATGCCTGGCCTTACGTTTTCCAACGAGCTTATTAGCAGAGATG 3435772 Query 22868 AAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCG 22923 | ||| |||||||||||||||| || || |||| ||||| ||| | |||| ||| Sbjct 3435773 AGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAGGCACCTGGTACACAAGCCG 3435828 Score = 96.9 bits (106), Expect = 2e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| ||||| ||||| || | || ||||| || |||||| | |||||||||| Sbjct 3436539 TGGCCTTTGCTGCTGTGGAAGGGATCTTCTTCTCTGGCTCTTTTGCGTCAATATTCTGGC 3436598 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | |||||||| || ||||| || | |||||||||||||| | |||||| | || | Sbjct 3436599 TCAAGAAACGGGGACTGATGCCTGGCCTTACGTTTTCCAACGAGCTTATTAGCAGAGATG 3436658 Query 22868 A 22868 | Sbjct 3436659 A 3436659 >seq4 Length=96435083 Score = 129 bits (142), Expect = 4e-25 Identities = 396/595 (67%), Gaps = 33/595 (6%) Strand=Plus/Minus Query 22345 ATGTACAAGAAGGCCGTTGCGTCTTTTTGGACCGTTGAGGAGGTGGATCTTAGTACTGAT 22404 ||||||||||| |||| || || || ||||| | ||||||||| || || | ||| Sbjct 65464748 ATGTACAAGAAAGCCGAGGCTTCCTTCTGGACGGCTGAGGAGGTCGACCTCTCCAAGGAT 65464689 Query 22405 GTACGCCATTGGACAGAAAAACTGA---CCGAGGCTGAGCGCAGGTTCATGTCTCACATA 22461 | | || ||| ||| |||| |||| | ||| || || || |||||| | Sbjct 65464688 ATTCAACACTGG---GAAGCGCTGAAACCCGACGA-GAGA-CATTTT-ATATCTCACGTC 65464635 Query 22462 CTGGCATTCTTTGCAATGGCAGATGGCATTGTAGGCGACAACCTTGTGT-GCAATTTCGC 22520 ||||| |||||||| | |||||||| || || ||||| ||| || || || Sbjct 65464634 CTGGCTTTCTTTGCTGCGAGTGATGGCATAGTCAATGAAAACCTGGTGGAGCGCTTCAGC 65464575 Query 22521 AAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGGTTTCAGGTGGCAATGGA 22580 || ||| || | || |||| ||| | ||||||||| || || | || ||||| Sbjct 65464574 CAA-GAAGTTCAGGTTA---CAGAGGCCCGCTGTTTCTATGGCTTCCAAATTGCCATGGA 65464519 Query 22581 AAATATA-CATGCTGAAATGTATACTCAGCTGAT---TA-TCACATTA--GTAGCTAAAG 22633 ||| ||| ||| |||||||||| | || || || || | |||||| | | |||| Sbjct 65464518 AAACATAACATTCTGAAATGTACAGTCTCCTCATCGATACTTACATTAAAGATTCCAAAG 65464459 Query 22634 AGAATCAAGCCGCATTGTTTTCA--GCAGCTGAAGATATGCCATGTGTTAAAGCCAAGGC 22691 ||| || | | |||| || ||| ||||| ||||| ||| ||||| Sbjct 65464458 AGAGGGAATA-----TCTCTTCAATGCTATTGAGACAATGCCTTGTGTGAAAAAGAAGGC 65464404 Query 22692 ACAGTGGGCTGCACAATGGCTGAATGCCACACATAAGT---CTATCGCAACACGTCTCTT 22748 | ||||| | ||| | | ||| | ||| |||| | | ||| | | Sbjct 65464403 CGACTGGGCCCTGCGTTGGATTGGGGG-ACAAAGAAGCTACCTATGGAGA-ACGAGTTGT 65464346 Query 22749 GGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCT 22808 ||||||||| ||||| ||||| || | || ||||| || |||| | | ||||||||||| Sbjct 65464345 GGCCTTTGCTGCTGTGGAAGGGATCCTCTTCTCTGGCTCCTTTGTGTCAATATTCTGGCT 65464286 Query 22809 GAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGA 22868 |||||||| || ||||| || | |||||||||||||| | |||||| | || || Sbjct 65464285 CAAGAAACGGGGACTGATGCCTGGCCTTACGTTTTCCAACGAGCTTATTAGCAGAGATGA 65464226 Query 22869 AGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCG 22923 ||| |||||||| |||||| || || |||| ||||| ||| | |||| ||| Sbjct 65464225 GGGTTTACACTGTTGCTTTGCCTGCCTGATGTTCAGGCACCTGGTACACAAGCCG 65464171 >seq26 Length=66536344 Score = 123 bits (136), Expect = 2e-23 Identities = 326/487 (67%), Gaps = 23/487 (5%) Strand=Plus/Minus Query 22447 TTCATGTCTCACATACTGGCATTCTTTGCAATGGCAG--ATGGCATTGTAGGCGACAACC 22504 || || |||||| | ||||| ||||||||| | ||| ||||||| || || |||| Sbjct 31519859 TTTATATCTCACGTCCTGGCTTTCTTTGCA--GCCAGTGATGGCATAGTCAATGAAAACC 31519802 Query 22505 TTGTGT-GCAATTTCGCAAAAGAACTTGACTATATTCCAGAAGCCAGAGCTTTCTATGGG 22563 | ||| || ||| || || ||| || | || |||| ||| | ||||||||| Sbjct 31519801 TGGTGGAGCGCTTTAGCCAA-GAAGTTCAGGTTA---CAGAGGCCCGCTGTTTCTATGGC 31519746 Query 22564 TTTCAGGTGGCAATGGAAAATATACATGCTGAAATGTATACTCAGCTGATTATCACATTA 22623 || || | || |||||||| | |||| |||||||||| | || || ||| ||||||| Sbjct 31519745 TTCCAAATTGCCATGGAAAACAAACATTCTGAAATGTACAGTCTCCTCATTGACACATTA 31519686 Query 22624 --GTAGCTAAAGAGAATCAAGCCGCATTGTTTTCA--GCAGCTGAAGATATGCCATGTGT 22679 | | ||||||| || | | |||| || ||| ||||| ||||| Sbjct 31519685 AAGATTCCAAAGAGAGGGAATA-----TCTCTTCAATGCTATTGAGACAATGCCTTGTGT 31519631 Query 22680 TAAAGCCAAGGCACAGTGGGCTGCACAATGGCTGAATGCCACACATAAGTCTATC---GC 22736 ||| |||| | ||||| | ||| | | ||| | ||| ||| | | Sbjct 31519630 GAAAAAGTAGGCTGACTGGGCCCTGCGTTGGATTTG-GAGACAAA-AAGACTACCTATGG 31519573 Query 22737 AACACGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGC 22796 | | | | |||||||||| ||||| |||| | || | || ||||| || |||||| | Sbjct 31519572 AGAAAGAGTTGTGGCCTTTGCTGCTGTAGAAGACATCTTCTTCTCTGGCTCTTTTGCGTC 31519513 Query 22797 CATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGAT 22856 ||||||||||| ||||||| || ||||| || | | |||||||| ||| | || Sbjct 31519512 AATATTCTGGCTCAAGAAACAGGGACTGATGCCTGGCCTTACATTTTCCAAAGAGCTTAT 31519453 Query 22857 TAGCCGTGACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAA 22916 |||| | || || || ||||||||| |||||| || || |||| ||||| ||| || Sbjct 31519452 TAGCAGAGATGAGCGTTTACACTGTGGCTTTGCCTGCCTGATGTTCAGGCACCTGGTAAG 31519393 Query 22917 CAAACCG 22923 ||| ||| Sbjct 31519392 CAAGCCG 31519386 >seq9 Length=86001432 Score = 122 bits (134), Expect = 6e-23 Identities = 133/176 (76%), Gaps = 3/176 (2%) Strand=Plus/Minus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| ||| | ||||| || || ||||| || |||||| | |||||||||| Sbjct 36370188 TGGCCTTTGCTGCTATGGAAGGGATC---TTCTCTGGCTCTTTTGCGTCAATATTCTGGC 36370132 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | | ||||| || ||||| || | |||||||||||||| | |||||| | || | Sbjct 36370131 TCAGGAAACTGGGACTGATGCCTGGCCTTACGTTTTCCAACGAGCTTATTAGCAGAGATG 36370072 Query 22868 AAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCG 22923 | ||| |||||||||||||||| || || |||| ||||| ||| | |||| ||| Sbjct 36370071 AGGGTTTACACTGTGACTTTGCCTGCCTGATGTTCAGGCACCTGGTACACAAGCCG 36370016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356206095983005