Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq7 86.0 6e-12 >seq7 Length=85103860 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || |||||||| || ||||| |||| | |||| ||||| ||||| || ||| Sbjct 35411296 GTGGACTCTTTCTGGATGTTGTAATTAAAGAGAGTGCGGCCATCTTCCAGCTGCTTGCCA 35411237 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 ||| |||| || || ||||| || || || ||||| ||||| || ||| || || Sbjct 35411236 GCAAAGATGAGTCGCTGCTGGTCAGGGGGGATGCCCTCTTTATCCTGGATCTTGGCCTTG 35411177 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| |||||||||||| | ||| | |||||||| |||| || Sbjct 35411176 ACGTTCTCAATGGTGTCACTGGGCTCCACCTTCAGGGTGATGGTCTTGCCAGTCAGGGTC 35411117 Query 139748 TTTACGAATATTTGCAT 139764 || | ||| |||||||| Sbjct 35411116 TTCATGAAGATTTGCAT 35411100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496024717932000