Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq4 235 5e-57 seq26 219 4e-52 seq87 159 3e-34 seq9 132 5e-26 seq42 123 2e-23 >seq4 Length=96435083 Score = 235 bits (260), Expect = 5e-57 Identities = 623/939 (66%), Gaps = 18/939 (2%) Strand=Plus/Plus Query 13527 AAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGA 13586 || ||| |||| || | ||| ||| || || || || || || ||||| | ||| Sbjct 65463857 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 65463916 Query 13587 TATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATA 13646 || || | |||| || ||||||||||| || || ||||| ||||| ||||||||||| Sbjct 65463917 TACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTTCCATG 65463976 Query 13647 AAATCAAATGGATTTATTGACAT--AAACACTTTATCACAACCTAGTTCTAATAGTAATC 13704 || |||||||||||| | || | ||| ||| | | | ||||| || | | | | Sbjct 65463977 AAGTCAAATGGATTTTCT-ACTTTGAAAATCTTGCTGA-ACCCTAGCTCCAGCATAAGCC 65464034 Query 13705 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13764 | || || | || || || || || ||| | | || ||||| || || || || | Sbjct 65464035 TGTCCGCCACGAATTCGATGTACTGCTTCATCAGGGCGCAGTTCATCCCGATGAGCTTCA 65464094 Query 13765 CAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAATAATTG 13824 |||| | | || | ||| || | |||| ||| || | | ||||| ||| Sbjct 65464095 CAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTGCGT---TGATAATGATTT 65464151 Query 13825 -TAATAATCTCATTAGAAGGAGGATATTTTA---GATGTTTAAAAATTAAACACGCAAAA 13880 | || ||| | || || | | || | || | || || | || ||||| Sbjct 65464152 CTTGTACTCTT-TGCTCCGGCGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGCAAAG 65464210 Query 13881 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13940 ||| || | ||||||||||| |||||||| ||||| ||||| || | || |||||| Sbjct 65464211 CAACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATC 65464270 Query 13941 AATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCA 14000 | ||| ||||| || | ||| ||||||| |||| || || || |||| || || || Sbjct 65464271 AGTCCCCGTTTCTTGAGCCAGAATATTGACACAAAGGAGCCAGAGAAGAGGATCCCTTCC 65464330 Query 14001 ACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGATATCCATTT 14059 || |||||||| || | | |||||||||| | | |||| ||||| | ||||| Sbjct 65464331 ACAGCAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCCAATCCAACG 65464390 Query 14060 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATA 14119 ||||| || | || ||||| | | || |||||| ||||||||||| || | ||| Sbjct 65464391 CAGGGCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATA 65464450 Query 14120 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 14179 |||| ||||||| | | | |||||| ||||| || || | || ||||||||||| || Sbjct 65464451 TTCCCTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATG 65464510 Query 14180 -TATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG--ACCATTGTAC 14236 |||||||||||| || || || || ||||| || || | || || | ||| || || Sbjct 65464511 TTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACC--TGAAC 65464568 Query 14237 TTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296 ||| | || | || ||| |||||||| ||||| |||||||| || ||||| || Sbjct 65464569 TTCTTGGCTGAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTCGCAGCAAAGAA 65464628 Query 14297 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGATAA 14356 |||| | || ||||| | | ||| || || || || ||| | | Sbjct 65464629 AGCCAGGACGTGAGATATAAAATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAAT 65464688 Query 14357 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14416 |||||| || || || || || ||| | ||||| || ||| | ||||| || ||||| Sbjct 65464689 ATCCTTGGAGAGGTCGACCTCCTCAGCCGTCCAGAAGGAAGCCTCGGCTTTCTTGTACAT 65464748 Query 14417 TACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 ||| || || | ||| || ||||| || || || Sbjct 65464749 CTGCCAGATATCATGGTATTCGATGGGAAAGACCACGAA 65464787 >seq26 Length=66536344 Score = 219 bits (242), Expect = 4e-52 Identities = 404/588 (69%), Gaps = 11/588 (2%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| |||| || | | ||||||||| |||||||| || || |||||||| | Sbjct 31519417 CAGGCAAAGCCACAGTGTAAACGCTCATCTCTGCTAATAAGCTCTTTGGAAAATGTAAGG 31519476 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||||| ||| |||| || | ||| ||||||| ||||| || || || ||||| Sbjct 31519477 CCAGGCATCAGTCCCTGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAG 31519536 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGT-TCGA 14050 || | || || |||||||| || | | || ||||||| | | | ||||||| || | Sbjct 31519537 ATGTCTTCTACAGCAGCAAAGGCCACAACTCTTTCTCCATAGGTAGTCTTTTTGTCTCCA 31519596 Query 14051 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14110 ||||| ||||| |||| | ||||| | | || |||||| ||||||||||| Sbjct 31519597 AATCCAACGCAGGGCCCAGTCAGCCTACTTTTTCACACAAGGCATTGTCTCAATAGCATT 31519656 Query 14111 AAATAAATATTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACA 14169 || | ||||||| ||||||| | | ||| || ||| ||||| || | || |||| Sbjct 31519657 GAAGAGATATTCCCTCTCTTTGGAATCTTTAA-----TGTGTCAATGAGGAGACTGTACA 31519711 Query 14170 TTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCG--A 14227 ||||||| ||| |||||||||| || || || || ||||| || || | || || | | Sbjct 31519712 TTTCAGAATGTTTGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAA 31519771 Query 14228 CCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGC 14287 || || ||||| | ||| | || ||| |||||||| ||||| |||||||| || Sbjct 31519772 CC--TGAACTTCTTGGCTAAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTGGC 31519829 Query 14288 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCA 14347 |||||| || |||| | || ||||| | | ||| ||| || || || | | Sbjct 31519830 TGCAAAGAAAGCCAGGACGTGAGATATAAAATGTCTCTCGTCAGGTTTCAGCGCTTCCTA 31519889 Query 14348 ATCGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14407 | | |||||| || || || || || ||| ||||||| || || | ||||| Sbjct 31519890 GTGTTGAATATCCTTGGAGAGGTCCACCTCGTCAGCTGTCCAGAAGAAGGCCTCGGCTTT 31519949 Query 14408 TTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14455 || ||||| ||| || || | ||| || ||||| || || || Sbjct 31519950 CTTGTACATCTGCCAGATATCATGGTATTCAATGGGAAAGACAACGAA 31519997 >seq87 Length=2570995 Score = 159 bits (176), Expect = 3e-34 Identities = 244/346 (71%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 13958 CCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTAT 14017 ||| ||||||| |||| || || || ||||| || || || || |||||||| | | Sbjct 1819201 CCAGAATATTGACACAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCAC 1819260 Query 14018 TAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATTTTCTAGCCCATTCAGAttt 14077 | |||||||||| | | || | ||||| | ||||| | | ||| || | || Sbjct 1819261 AACTCGTTCTCCATAGGTAGCATCTTTGTCCCCAATCCAATGCACGGTCCAGTCGGCCTT 1819320 Query 14078 ttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACT 14137 ||||| | | || |||||| ||||||||||| | | ||||||| ||||||| | | Sbjct 1819321 CTTTTTCACACAAGGCATTGTCTCAATAGCATTGACAAGATATTCCCTCTCTTTGGAATC 1819380 Query 14138 TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTAT 14197 | |||||| || |||| || | || ||||||||||| |||||||||||||| || || Sbjct 1819381 TTTAATGTAGGTGACAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAAT 1819440 Query 14198 CTGAAAACCATAAAAGCATCTAGCTTCCG--ACCATTGTACTTCCGAGTAAAATCTTTCG 14255 || || ||||| || || || || || | ||| || ||||| | ||| | ||| Sbjct 1819441 TTGGAAGCCATAGAAACAGCTGGCCTCTGTAACC--TGAACTTCTTGGCTAAAGCACTCG 1819498 Query 14256 GCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAATGCCA 14301 ||| ||||||||| |||| |||||||| | |||| || |||| Sbjct 1819499 ACCAGATTTTCATTGACTAATCCATCACTCGTCACAAAGAAAGCCA 1819544 >seq9 Length=86001432 Score = 132 bits (146), Expect = 5e-26 Identities = 198/279 (71%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| ||||| || | ||||||||||| |||||||| ||||| ||||| || | Sbjct 36370047 CAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGG 36370106 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||||| ||| |||| | | ||| ||||||| ||||| || || | |||| Sbjct 36370107 CCAGGCATCAGTCCCAGTTTCCTGAGCCAGAATATTGACGCAAAAGAGCC---AGAGAAG 36370163 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 || || || | |||||||| || | | |||||||||| | | |||| ||||| | Sbjct 36370164 ATCCCTTCCATAGCAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCA 36370223 Query 14052 ATCCATTTTCTAGCCCATTCAG-AtttttttttAATAAAATCCATTGTTTCAATAGCATT 14110 ||||| ||||| |||| || ||||| | | || |||||| ||||||||||| Sbjct 36370224 ATCCAACGCAGGGCCCAGTCAGCCTTCTTTTTCCACACAAGGCATTGTCTCAATAGCATT 36370283 Query 14111 AAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGT 14149 || | || ||| ||||||| | | | |||||| || Sbjct 36370284 GAAGAGCTACTCCCTCTCTTTGGAATCTTCAATGTAAGT 36370322 >seq42 Length=9663327 Score = 123 bits (136), Expect = 2e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||| ||||| || | ||||||||||| |||||||| ||||| ||||| || | Sbjct 3435797 CAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGG 3435738 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||||| ||| ||||| || | ||| ||||||| ||||| || || || ||||| Sbjct 3435737 CCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAG 3435678 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCC 14029 || || || || |||||||| || | | ||||||||| Sbjct 3435677 ATCCCTTCCACAGCAGCAAAGGCCACAACTCGTTCTCC 3435640 Score = 113 bits (124), Expect = 4e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 14064 GCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCC 14123 ||||| || | || ||||| | | || |||||| ||||||||||| || | ||||||| Sbjct 3435477 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 3435418 Query 14124 TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATG 14183 ||||||| | | | |||||| ||||| || || | || ||||||||||| |||||| Sbjct 3435417 CTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATG 3435358 Query 14184 TTTTCCATAGCTATCTGAAAACCATAAAAGCA 14215 |||||||| || || || || ||||| || || Sbjct 3435357 TTTTCCATGGCAATTTGGAAGCCATAGAAACA 3435326 Score = 113 bits (124), Expect = 4e-20 Identities = 116/152 (76%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 14064 GCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAATATTCC 14123 ||||| || | || ||||| | | || |||||| ||||||||||| || | ||||||| Sbjct 3436363 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 3436304 Query 14124 TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATG 14183 ||||||| | | | |||||| ||||| || || | || ||||||||||| |||||| Sbjct 3436303 CTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATG 3436244 Query 14184 TTTTCCATAGCTATCTGAAAACCATAAAAGCA 14215 |||||||| || || || || ||||| || || Sbjct 3436243 TTTTCCATGGCAATTTGGAAGCCATAGAAACA 3436212 Score = 82.4 bits (90), Expect = 7e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 13527 AAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGA 13586 || ||| |||| || | ||| ||| || || || || || || ||||| | ||| Sbjct 3438637 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 3438578 Query 13587 TATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATA 13646 || || | |||| || ||||||||||| || || ||||| ||||| ||||||||||| Sbjct 3438577 TACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 3438518 Query 13647 AAATCAAATGGATTT 13661 || ||||| |||||| Sbjct 3438517 AAGTCAAACGGATTT 3438503 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479690011539000