Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq4 208 7e-49 seq26 201 1e-46 seq87 127 2e-24 seq42 118 1e-21 seq9 114 1e-20 >seq4 Length=96435083 Score = 208 bits (230), Expect = 7e-49 Identities = 617/939 (66%), Gaps = 18/939 (2%) Strand=Plus/Plus Query 13315 AAATCAACATCTAATGAAAAAACATTATCGTCTTTGTTAGAAATAACGCCCATTTTTTGA 13374 || ||| |||| || | ||| ||| || || || || || || ||||| | ||| Sbjct 65463857 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 65463916 Query 13375 TATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATTTTCCATA 13434 || || | |||| || ||||| ||||| || || ||||| ||||| ||||||||||| Sbjct 65463917 TACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTTCCATG 65463976 Query 13435 AAATCGAATGGATTTGTTGACAT--AAACACTTTATCACAACCTAGTTCTAATAATAATC 13492 || || ||||||||| | || | ||| ||| | | | ||||| || | | | | Sbjct 65463977 AAGTCAAATGGATTTTCT-ACTTTGAAAATCTTGCTGA-ACCCTAGCTCCAGCATAAGCC 65464034 Query 13493 TATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAGTTTTA 13552 | || || | || || || || || ||| | | || ||||| || || || || | Sbjct 65464035 TGTCCGCCACGAATTCGATGTACTGCTTCATCAGGGCGCAGTTCATCCCGATGAGCTTCA 65464094 Query 13553 CAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAATAATCT 13612 |||| | | || | ||| || | |||| ||| || ||| ||||| || | Sbjct 65464095 CAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTGC---GTTGATAATGATTT 65464151 Query 13613 -TAATAATGTCATTAGAAGGAGGATATTTTA---GATGTTTAAAAATTAAACACGCAAAA 13668 | || | | | || || | | || | || | || || | || ||||| Sbjct 65464152 CTTGTACTCTT-TGCTCCGGCGGCTTGTGTACCAGGTGCCTGAACATCAGGCAGGCAAAG 65464210 Query 13669 TCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCATC 13728 ||| || | ||||||||||| |||||||| ||||| ||||| || | || |||||| Sbjct 65464211 CAACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATC 65464270 Query 13729 AATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCA 13788 | ||| ||||| || | ||| ||||||| | || || || || |||| || || || Sbjct 65464271 AGTCCCCGTTTCTTGAGCCAGAATATTGACACAAAGGAGCCAGAGAAGAGGATCCCTTCC 65464330 Query 13789 ACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGT-TTGATATCCATTT 13847 || |||||||| || | | |||||||||| | | |||| ||||| ||||| Sbjct 65464331 ACAGCAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCCAATCCAACG 65464390 Query 13848 TCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATG 13907 ||||| || | || ||||| | | || |||||| || || |||||||| | || Sbjct 65464391 CAGGGCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATA 65464450 Query 13908 TTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTG 13967 |||| ||||||| | | | |||||| ||||| || || | || ||||||||||| || Sbjct 65464451 TTCCCTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATG 65464510 Query 13968 -TATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG--ACCATTGTAC 14024 ||||||||| || || || || || ||||| ||||| | || |||| ||| || || Sbjct 65464511 TTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACC--TGAAC 65464568 Query 14025 CTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084 || | || | || ||| ||||||||| || || |||||||| || ||||| || Sbjct 65464569 TTCTTGGCTGAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTCGCAGCAAAGAA 65464628 Query 14085 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAATCGGCTAA 14144 |||| | || ||||| | | ||| || || || || ||| | | Sbjct 65464629 AGCCAGGACGTGAGATATAAAATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAAT 65464688 Query 14145 ATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATACAT 14204 |||||| || || || || || ||| | ||||| || ||| | ||||| || ||||| Sbjct 65464689 ATCCTTGGAGAGGTCGACCTCCTCAGCCGTCCAGAAGGAAGCCTCGGCTTTCTTGTACAT 65464748 Query 14205 TACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 ||| || || | ||| || ||||| || || || Sbjct 65464749 CTGCCAGATATCATGGTATTCGATGGGAAAGACCACGAA 65464787 >seq26 Length=66536344 Score = 201 bits (222), Expect = 1e-46 Identities = 400/588 (68%), Gaps = 11/588 (2%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| |||| || | | ||||||||| |||||||| || || |||||||| | Sbjct 31519417 CAGGCAAAGCCACAGTGTAAACGCTCATCTCTGCTAATAAGCTCTTTGGAAAATGTAAGG 31519476 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 || ||||||| ||| |||| || | ||| ||||||| || || || || || ||||| Sbjct 31519477 CCAGGCATCAGTCCCTGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAG 31519536 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTG-A 13838 || | || || |||||||| || | | || ||||||| | | | ||||||| | | Sbjct 31519537 ATGTCTTCTACAGCAGCAAAGGCCACAACTCTTTCTCCATAGGTAGTCTTTTTGTCTCCA 31519596 Query 13839 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 ||||| ||||| |||| | ||||| | | || |||||| || || ||||| Sbjct 31519597 AATCCAACGCAGGGCCCAGTCAGCCTACTTTTTCACACAAGGCATTGTCTCAATAGCATT 31519656 Query 13899 GAATAAATGTTCCTTCTCTTTAGTA-CTTGAAATGTATGTATCAATAAGTAAGCTATACA 13957 ||| | || |||| ||||||| | | ||| || ||| ||||| || | || |||| Sbjct 31519657 GAAGAGATATTCCCTCTCTTTGGAATCTTTAA-----TGTGTCAATGAGGAGACTGTACA 31519711 Query 13958 TTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG--A 14015 ||||||| ||| ||||||| || || || || || ||||| ||||| | || |||| | Sbjct 31519712 TTTCAGAATGTTTGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAA 31519771 Query 14016 CCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGC 14075 || || || || | ||| | || ||| ||||||||| || || |||||||| || Sbjct 31519772 CC--TGAACTTCTTGGCTAAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTGGC 31519829 Query 14076 TGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCA 14135 |||||| || |||| | || ||||| | | ||| ||| || || || | | Sbjct 31519830 TGCAAAGAAAGCCAGGACGTGAGATATAAAATGTCTCTCGTCAGGTTTCAGCGCTTCCTA 31519889 Query 14136 ATCGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTT 14195 | | |||||| || || || || || ||| ||||||| || || | ||||| Sbjct 31519890 GTGTTGAATATCCTTGGAGAGGTCCACCTCGTCAGCTGTCCAGAAGAAGGCCTCGGCTTT 31519949 Query 14196 TTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAA 14243 || ||||| ||| || || | ||| || ||||| || || || Sbjct 31519950 CTTGTACATCTGCCAGATATCATGGTATTCAATGGGAAAGACAACGAA 31519997 >seq87 Length=2570995 Score = 127 bits (140), Expect = 2e-24 Identities = 237/346 (68%), Gaps = 4/346 (1%) Strand=Plus/Plus Query 13746 CCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTAT 13805 ||| ||||||| | || || || || ||||| || || || || |||||||| | | Sbjct 1819201 CCAGAATATTGACACAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCAC 1819260 Query 13806 TAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCATTTTCTAGCCCATTCAGAttt 13865 | |||||||||| | | || | ||||| ||||| | | ||| || | || Sbjct 1819261 AACTCGTTCTCCATAGGTAGCATCTTTGTCCCCAATCCAATGCACGGTCCAGTCGGCCTT 1819320 Query 13866 ttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCCTTCTCTTTAGTACT 13925 ||||| | | || |||||| || || ||||||| | || |||| ||||||| | | Sbjct 1819321 CTTTTTCACACAAGGCATTGTCTCAATAGCATTGACAAGATATTCCCTCTCTTTGGAATC 1819380 Query 13926 TGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTAT 13985 | |||||| || |||| || | || ||||||||||| ||||||||||| || || || Sbjct 1819381 TTTAATGTAGGTGACAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAAT 1819440 Query 13986 CTGAAAACCATAAAAACATCTAGCTTCTG--ACCATTGTACCTCCGAGTAAAATCTTTCT 14043 || || ||||| ||||| || || |||| ||| || || || | ||| | || Sbjct 1819441 TTGGAAGCCATAGAAACAGCTGGCCTCTGTAACC--TGAACTTCTTGGCTAAAGCACTCG 1819498 Query 14044 GCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAATGCCA 14089 ||| |||||||| || | |||||||| | |||| || |||| Sbjct 1819499 ACCAGATTTTCATTGACTAATCCATCACTCGTCACAAAGAAAGCCA 1819544 >seq42 Length=9663327 Score = 118 bits (130), Expect = 1e-21 Identities = 121/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| ||||| || | ||||||||||| |||||||| ||||| ||||| || | Sbjct 3435797 CAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGG 3435738 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 || ||||||| ||| ||||| || | ||| ||||||| || || || || || ||||| Sbjct 3435737 CCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAG 3435678 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCC 13817 || || || || |||||||| || | | ||||||||| Sbjct 3435677 ATCCCTTCCACAGCAGCAAAGGCCACAACTCGTTCTCC 3435640 Score = 105 bits (116), Expect = 6e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 13852 GCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCC 13911 ||||| || | || ||||| | | || |||||| || || |||||||| | || |||| Sbjct 3435477 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 3435418 Query 13912 TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATG 13971 ||||||| | | | |||||| ||||| || || | || ||||||||||| |||||| Sbjct 3435417 CTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATG 3435358 Query 13972 TTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 ||||| || || || || || ||||| ||||| | || |||| Sbjct 3435357 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTG 3435315 Score = 105 bits (116), Expect = 6e-18 Identities = 121/163 (74%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 13852 GCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAATGTTCC 13911 ||||| || | || ||||| | | || |||||| || || |||||||| | || |||| Sbjct 3436363 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 3436304 Query 13912 TTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGTGTATG 13971 ||||||| | | | |||||| ||||| || || | || ||||||||||| |||||| Sbjct 3436303 CTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATG 3436244 Query 13972 TTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 ||||| || || || || || ||||| ||||| | || |||| Sbjct 3436243 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTG 3436201 >seq9 Length=86001432 Score = 114 bits (126), Expect = 1e-20 Identities = 194/279 (70%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||| ||||| || | ||||||||||| |||||||| ||||| ||||| || | Sbjct 36370047 CAGGCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGG 36370106 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 || ||||||| ||| |||| | | ||| ||||||| || || || || | |||| Sbjct 36370107 CCAGGCATCAGTCCCAGTTTCCTGAGCCAGAATATTGACGCAAAAGAGCC---AGAGAAG 36370163 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839 || || || | |||||||| || | | |||||||||| | | |||| ||||| Sbjct 36370164 ATCCCTTCCATAGCAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCA 36370223 Query 13840 ATCCATTTTCTAGCCCATTCAG-AtttttttttAATAAAATCCATTGTTTCGATTGCATT 13898 ||||| ||||| |||| || ||||| | | || |||||| || || ||||| Sbjct 36370224 ATCCAACGCAGGGCCCAGTCAGCCTTCTTTTTCCACACAAGGCATTGTCTCAATAGCATT 36370283 Query 13899 GAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGT 13937 ||| | | ||| ||||||| | | | |||||| || Sbjct 36370284 GAAGAGCTACTCCCTCTCTTTGGAATCTTCAATGTAAGT 36370322 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478550901749400