Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq17 107 1e-18 seq33 98.7 8e-16 seq9 86.0 5e-12 >seq17 Length=65020687 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| ||||| ||||||||||| | || ||||||||| | ||||| || ||| Sbjct 35302158 CCACCACGAAGTCTCAACACCAAATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGAC 35302217 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| || || |||| || ||||| ||||| |||| | ||| ||||| | || Sbjct 35302218 AAAGTACGGTCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 35302277 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAG-CCTCGAC 43061 | ||||| || || |||| ||||||| | | | ||||| | || || || Sbjct 35302278 ATTCCTTCCTTATCCTGGATCTTGGCTTTGACATTTTCTATAGTGTC-CGAGAGTTCAAC 35302336 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||| || |||||||| || || || ||||| ||||| ||||| Sbjct 35302337 CTCGAGCGTGATGGTTTTTCCTGTAAGGGTCTTCACGAAAATCTGCAT 35302384 >seq33 Length=41749222 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| ||||| ||||||||||| | ||| ||||||||| | ||||| || ||| Sbjct 34672176 CCACCACGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 34672235 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || |||| || ||||| || || |||| | ||| ||||| | || Sbjct 34672236 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGA 34672295 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| | ||||| | | | ||||| | || || Sbjct 34672296 ATTCCTTCCTTATCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACC 34672355 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | ||| || |||||||| || || || ||||| ||||| ||||| Sbjct 34672356 TCGAGCGTGATGGTTTTTCCCGTAAGGGTCTTCACGAAAATCTGCAT 34672402 >seq9 Length=86001432 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| ||||| ||||||||||| | ||| ||||||||| | ||||| || ||| Sbjct 39797617 CCACCACGAAGTCTCAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGAC 39797558 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || ||||| | || |||| || ||||| ||||| |||| | ||| ||||| | || Sbjct 39797557 AAAGTACGGCCATCTTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 39797498 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || | |||| | ||||| | | | ||||| | || || Sbjct 39797497 ATTCCTTCCTTACCCTGGATCTTGGCCTTGACATTTTCTATAGTGTCCGAGGGTTCAACC 39797438 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || ||||| || | || || ||||| ||||| ||||| Sbjct 39797437 TCGAGCGGGATGGTTTTCCCCATAAGGGTCTTCACGAAAATCTGCAT 39797391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381340155287430