Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq4 387 2e-102 seq26 336 3e-87 seq87 230 3e-55 seq9 199 5e-46 seq42 188 1e-42 seq73 111 2e-19 seq61 102 1e-16 >seq4 Length=96435083 Score = 387 bits (428), Expect = 2e-102 Identities = 651/929 (70%), Gaps = 21/929 (2%) Strand=Plus/Plus Query 41723 AAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTTTGG 41779 |||||| |||| || | ||| ||| ||| || | ||||| || ||||| | || Sbjct 65463857 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 65463916 Query 41780 TATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCATG 41839 || || ||||| || || || || || || ||||||||||| | ||| |||||||||||| Sbjct 65463917 TACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATATTTTCCATG 65463976 Query 41840 AAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTA 41899 || ||||| ||||| || || |||| || | || || | || || | || Sbjct 65463977 AAGTCAAATGGATTTTCTACTTTGAAAATCTTGCTGAACCCTAGCTCCAGCATAAGCCTG 65464036 Query 41900 TCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 41959 || || | |||||| || || ||||||| | || ||||| || || || || || Sbjct 65464037 TCCGCCACGAATTCGATGTACTGCTTCATCAGGGCGCAGTTCATCCCGATGAGCTTCACA 65464096 Query 41960 GGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT-AGATCT 42018 || || ||| | || ||||| || || || | || |||| | ||||| | ||| Sbjct 65464097 GGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTGCGT---TGATAATGATTTCT 65464153 Query 42019 T--ACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 42074 | ||| ||| || ||| || ||| | || | ||||||| || || || Sbjct 65464154 TGTACTCTTTGCTCCGGCGGCTTGTGTACCAGG--TGCCTGAACATCAGGCAGGCAAAGC 65464211 Query 42075 CGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 42134 ||||| | |||||||||||| ||||| | |||||||||||||| || || ||||| | Sbjct 65464212 AACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCA 65464271 Query 42135 GGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTA 42194 | || || || || ||||| ||||| ||| |||| || ||||| |||| ||| ||||| | Sbjct 65464272 GTCCCCGTTTCTTGAGCCAGAATATTGACACAAAGGAGCCAGAGAAGAGGATCCCTTCCA 65464331 Query 42195 CTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTA-TCCACTTT 42250 | || |||||||| | || || |||||||| | | | |||| | |||| Sbjct 65464332 CAGCAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCCAATCCAACGC 65464391 Query 42251 TGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAG 42310 | ||||| |||||||||||||| ||||||||||| || || || ||||| |||||||| Sbjct 65464392 AGGGCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATAT 65464451 Query 42311 tttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATG- 42369 | | || || |||||||| || |||||||| | ||||| |||||||| ||||| Sbjct 65464452 TCCCTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGT 65464511 Query 42370 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTC 42429 |||||||| ||||| || || || || |||||||| | |||||| |||||||| ||||| Sbjct 65464512 TATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTC 65464571 Query 42430 TGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGC 42489 | | || || || | | ||||| || ||||| || ||||| || ||||| || || Sbjct 65464572 TTGGCTGAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTCGCAGCAAAGAAAGC 65464631 Query 42490 CAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTG-ATAT 42548 || || || |||||||| | | ||||| ||| || | |||| | ||| |||| Sbjct 65464632 CAGGACGTGAGATATAAAATGTCTCTCGTCGGGT-TTCAGCGCTTCCCAGTGTTGAATAT 65464690 Query 42549 CTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATAT 42608 | || || | || || || || ||||||| || || || || || || || ||||| | Sbjct 65464691 CCTTGGAGAGGTCGACCTCCTCAGCCGTCCAGAAGGAAGCCTCGGCTTTCTTGTACATCT 65464750 Query 42609 TCCAGATATCATGATATTGAATTGGGAAA 42637 |||||||||||| |||| | ||||||| Sbjct 65464751 GCCAGATATCATGGTATTCGA-TGGGAAA 65464778 >seq26 Length=66536344 Score = 336 bits (372), Expect = 3e-87 Identities = 640/931 (69%), Gaps = 30/931 (3%) Strand=Plus/Plus Query 41723 AAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTTTGG 41779 |||||| |||| || | |||| ||| ||| || | || || || |||| | || Sbjct 31519072 AAGTCAGCATCCAAGGTAAAAGAATTCTCTGCTGAATTTGAAATCACCTCCATCCTCTGA 31519131 Query 41780 TATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCATG 41839 || |||||||| || || || | || || ||||| ||||| | ||| |||||||||| | Sbjct 31519132 TACTCACCCACTCGCTTCTCAAGGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCACG 31519191 Query 41840 AAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTA 41899 || ||||| ||||| || || |||| || | || || | || || | | Sbjct 31519192 AAGTCAAAAGGATTTTCTACTTTGGAAATCTTGCTGAACCCTAGCTCCAGCATAAGCGTG 31519251 Query 41900 TCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 41959 || || | |||||| || || ||||| | || ||||| | || || || || Sbjct 31519252 TCGGCCACGAATTCGATGTACCGCTTCATGAGGGTGCAGTTCATCCTGATGAGCTTCACA 31519311 Query 41960 GGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT-AGATCT 42018 || || ||| | || ||||| | || | || || |||| | ||||| | ||| Sbjct 31519312 GGCAGGGCCTCCGTGAGAAACACCTGCTTTATCCTCACTGCGT---TGATAATGATTTCT 31519368 Query 42019 T--ACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 42074 | ||| ||| || ||| || ||| | || | ||||||| || || || Sbjct 31519369 TGTACTCTTTGCTCTGGCGGCTTGCTTACCAGG--TGCCTGAACATCAGGCAGGCAAAGC 31519426 Query 42075 CGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 42134 | ||||| | || ||||||||| ||||| | || |||||||| || || || ||||| | Sbjct 31519427 CACAGTGTAAACGCTCATCTCTGCTAATAAGCTCTTTGGAAAATGTAAGGCCAGGCATCA 31519486 Query 42135 GGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTA 42194 | || | || || ||||| ||||| |||||||| || ||||| |||||||| |||||| Sbjct 31519487 GTCCCTGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATGTCTTCTA 31519546 Query 42195 CTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCAT-GTATCCACTTTTGA 42253 | || |||||||| | || ||| |||||||| || | | | | || |||| | | Sbjct 31519547 CAGCAGCAAAGGCCACAACTCTTTCTCCATA---GGTAGTCTTTTTGTCTCCAAATCCAA 31519603 Query 42254 ------GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGA 42307 ||||| || |||| |||||| ||||||||||| || || || ||||| |||||| Sbjct 31519604 CGCAGGGCCCAGTCAGCCTACTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGA 31519663 Query 42308 TAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAA 42367 || | | || || |||||||| ||| || || | ||||| |||||||| ||| Sbjct 31519664 TATTCCCTCTCTTTGGAATCTTTAA----TGTGTCAATGAGGAGACTGTACATTTCAGAA 31519719 Query 42368 TGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACT 42427 || ||||||| ||||| || || || || |||||||| | |||||| |||||||| ||| Sbjct 31519720 TGTTTGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACT 31519779 Query 42428 TCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAAC 42487 ||| | ||| || || | | ||||| || ||||| || |||||||||||||| || Sbjct 31519780 TCTTGGCTAAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTGGCTGCAAAGAAA 31519839 Query 42488 GCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTG-AT 42546 |||| || || |||||||| | | ||||| ||| || | |||| | ||| || Sbjct 31519840 GCCAGGACGTGAGATATAAAATGTCTCTCGTCAGGT-TTCAGCGCTTCCTAGTGTTGAAT 31519898 Query 42547 ATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACAT 42606 ||| || || | || || || || | ||||| || | || || || || || ||||| Sbjct 31519899 ATCCTTGGAGAGGTCCACCTCGTCAGCTGTCCAGAAGAAGGCCTCGGCTTTCTTGTACAT 31519958 Query 42607 ATTCCAGATATCATGATATTGAATTGGGAAA 42637 | |||||||||||| |||| || ||||||| Sbjct 31519959 CTGCCAGATATCATGGTATTCAA-TGGGAAA 31519988 >seq87 Length=2570995 Score = 230 bits (254), Expect = 3e-55 Identities = 341/479 (71%), Gaps = 6/479 (1%) Strand=Plus/Plus Query 42150 GCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAA 42209 |||| ||||| ||| |||| || ||||| |||||||| |||||||| || ||||||| | Sbjct 1819200 GCCAGAATATTGACACAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCA 1819259 Query 42210 TAAGTCTCTCTCCATAACCGGCAC---TGTCATGTATCCACTTTTGAGCCCAATCGGCCT 42266 || || |||||||| ||| |||| ||||| | | ||| ||||||| Sbjct 1819260 CAACTCGTTCTCCATAGGTAGCATCTTTGTCCCCAATCCAATGCACGGTCCAGTCGGCCT 1819319 Query 42267 TCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTAT 42326 ||||||| ||||||||||| || || || ||||| | ||||| | | || || || Sbjct 1819320 TCTTTTTCACACAAGGCATTGTCTCAATAGCATTGACAAGATATTCCCTCTCTTTGGAAT 1819379 Query 42327 CTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCA 42386 |||||| || || | || | ||||| |||||||| ||||| |||||||| ||||| | Sbjct 1819380 CTTTAATGTAGGTGACAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAA 1819439 Query 42387 TCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAG 42446 | || || || |||||||| |||||||| |||||||| |||||| | ||| | || Sbjct 1819440 TTTGGAAGCCATAGAAACAGCTGGCCTCTGTAACCTGAACTTCTTGGCTAAAGCACTCGA 1819499 Query 42447 CTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAA 42506 | | |||||| || |||| ||| ||||| | |||| || |||| || || ||||| Sbjct 1819500 CCAGATTTTCATTGACTAATCCATCACTCGTCACAAAGAAAGCCAGGACGTGGGATATAA 1819559 Query 42507 AATATTTTTCGTCCGGTGTTAATTTATTCCAATCATTG-ATATCTTTAGATATATCTACT 42565 ||| | | ||||| ||| || | |||| | ||| ||||| || || | || || Sbjct 1819560 AATGTCTCTCGTCGGGT-TTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACC 1819618 Query 42566 TCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATA 42624 || || || |||| || || || || || || || ||| | | |||||||||||| || Sbjct 1819619 TCCTCAGCCATCCAGAAGGAGGCCTCGGCTTTCTTGTAC-TCTGCCAGATATCATGGTA 1819676 >seq9 Length=86001432 Score = 199 bits (220), Expect = 5e-46 Identities = 405/596 (68%), Gaps = 14/596 (2%) Strand=Plus/Plus Query 41723 AAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTTTGG 41779 |||||| |||| || | ||| ||| ||| || | ||||| || ||||| | || Sbjct 36369702 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 36369761 Query 41780 TATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCATG 41839 || | ||||| || || || || || || ||||| ||||| | ||| |||||||||||| Sbjct 36369762 TACTTGCCCACGCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 36369821 Query 41840 AAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTA 41899 | ||||||||||| || || |||| || | ||||| | || || | || Sbjct 36369822 GAGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAATCCTAGCTCCAGCATAAGCCTG 36369881 Query 41900 TCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 41959 || || | |||||| || || ||||||| || | || || || || || || Sbjct 36369882 TCCGCCACGAATTCGATGTAGTGCTTCATCAGGGTGCAGCTTATCCCGATGAGCTTCACA 36369941 Query 41960 GGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATAGATCTT 42019 || || ||| | || ||||| || || || || || |||| | || || | | Sbjct 36369942 GGCAGGGCCTCCGTGAGAAACTCCTGCTCTATCCTCACTGCGTTGATGATGATTTCTTGT 36370001 Query 42020 ACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGCGAAATCGC 42077 ||| ||| || ||| || ||| | || | ||||||| || || || || | Sbjct 36370002 ACTCTTTGCTCCGGCGGCTTGTGTACCAGG--TGCCTGAACATCAGGCAGGCAAAGTCAC 36370059 Query 42078 AGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGC 42137 |||| | |||||||||||| ||||| | |||||||||||||| || || ||||| || | Sbjct 36370060 AGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAGTC 36370119 Query 42138 CACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTG 42197 | | || | ||||| ||||| |||||||| || |||| ||||||| ||||| | | Sbjct 36370120 CCAGTTTCCTGAGCCAGAATATTGACGCAAAAGAGCCAG---AGAAGATCCCTTCCATAG 36370176 Query 42198 CCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCATGTATCCACTTTTGAG 42254 | |||||||| | || || |||||||| | | | |||| ||||| | | Sbjct 36370177 CAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCAATCCAACGCAGGG 36370236 Query 42255 CCCAATCGGCCTTCTTTTT-TACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 42309 |||| || ||||||||||| ||||||||||| || || || ||||| ||||| || Sbjct 36370237 CCCAGTCAGCCTTCTTTTTCCACACAAGGCATTGTCTCAATAGCATTGAAGAGCTA 36370292 >seq42 Length=9663327 Score = 188 bits (208), Expect = 1e-42 Identities = 350/508 (69%), Gaps = 13/508 (3%) Strand=Plus/Minus Query 41723 AAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTTTGG 41779 |||||| |||| || | ||| ||| ||| || | ||||| || ||||| | || Sbjct 3436142 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 3436083 Query 41780 TATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCATG 41839 || | ||||| || || || || || || ||||| ||||| | ||| |||||||||||| Sbjct 3436082 TACTTGCCCACGCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 3436023 Query 41840 AAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATCAATCTA 41899 | ||||||||||| || || |||| || | ||||| | || || | || Sbjct 3436022 GAGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAATCCTAGCTCCAGCATAAGCCTG 3435963 Query 41900 TCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACT 41959 || || | |||||| || || ||||||| || | || || || || || || Sbjct 3435962 TCCGCCACGAATTCGATGTAGTGCTTCATCAGGGTGCAGCTTATCCCGATGAGCTTCACA 3435903 Query 41960 GGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAAT-AGATCT 42018 || || ||| | || ||||| || || || || | |||| | ||||| | ||| Sbjct 3435902 GGCAGGGCCTCCGTGAGAAACTCCTGCTCTATCCTCAAGGCGT---TGATAATGATTTCT 3435846 Query 42019 T--ACTGTTTCTTCACTCGG--TGGATACAATAAATGTTTAAACATCAAACATGCGAAAT 42074 | ||| ||| || ||| || ||| | || | ||||||| || || || | Sbjct 3435845 TGTACTCTTTGCTCCGGCGGCTTGTGTACCAGG--TGCCTGAACATCAGGCAGGCAAAGT 3435788 Query 42075 CGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTA 42134 | ||||| | |||||||||||| ||||| | |||||||||||||| || || ||||| | Sbjct 3435787 CACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCA 3435728 Query 42135 GGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTA 42194 | || || || || ||||| ||||| |||||||| || ||||| |||||||| ||||| | Sbjct 3435727 GTCCCCGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATCCCTTCCA 3435668 Query 42195 CTGCCGCAAAGGCAATAAGTCTCTCTCC 42222 | || |||||||| | || || ||||| Sbjct 3435667 CAGCAGCAAAGGCCACAACTCGTTCTCC 3435640 Score = 161 bits (178), Expect = 1e-34 Identities = 142/177 (80%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 42254 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 42313 ||||| |||||||||||||| ||||||||||| || || || ||||| |||||||| | Sbjct 3435477 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 3435418 Query 42314 ttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATG 42373 | || || |||||||| || |||||||| | ||||| |||||||| ||||| ||| Sbjct 3435417 CTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATG 3435358 Query 42374 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCT 42430 ||||| ||||| || || || || |||||||| | |||||| |||||||| |||||| Sbjct 3435357 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTCT 3435301 Score = 147 bits (162), Expect = 3e-30 Identities = 132/166 (80%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 42254 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 42313 ||||| |||||||||||||| ||||||||||| || || || ||||| |||||||| | Sbjct 3436363 GCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTCC 3436304 Query 42314 ttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATG 42373 | || || |||||||| || |||||||| | ||||| |||||||| ||||| ||| Sbjct 3436303 CTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTATG 3436244 Query 42374 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAA 42419 ||||| ||||| || || || || |||||||| | |||||| |||| Sbjct 3436243 TTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAA 3436198 Score = 123 bits (136), Expect = 3e-23 Identities = 109/136 (80%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| ||||| | |||||||||||||| || || ||||| || || || || | Sbjct 3436661 CCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCT 3436602 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| |||||||| || ||||| |||||||| ||||| || || ||||||| Sbjct 3436601 TGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATCCCTTCCACAGCAGCAAAGG 3436542 Query 42207 CAATAAGTCTCTCTCC 42222 | | || || ||||| Sbjct 3436541 CCACAACTCGTTCTCC 3436526 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/187 (72%), Gaps = 3/187 (2%) Strand=Plus/Minus Query 42452 TTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT 42511 ||||| || ||||| || ||||| || ||||| || |||| || || |||||||| | Sbjct 3434561 TTTTCATTGACTATGCCATCACTAGCCGCAAAGAAAGCCAGGACGTGAGATATAAAATGT 3434502 Query 42512 TTTTCGTCCGGTGTTAATTTATTCCAATCATTGA-TATCTTTAGATATATCTACTTCTTC 42570 | ||||| ||| || | |||| | |||| |||| || || | || || || || Sbjct 3434501 CTCTCGTCGGGT-TTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCGACCTCCTC 3434443 Query 42571 TACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCCAGATATCATGATATTGAAT 42630 ||||||| || || || || || || || ||||| | |||||||||||| |||| | Sbjct 3434442 AGCCGTCCAGAAGGAAGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTATTCGA- 3434384 Query 42631 TGGGAAA 42637 ||||||| Sbjct 3434383 TGGGAAA 3434377 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/134 (75%), Gaps = 3/134 (2%) Strand=Plus/Minus Query 41723 AAGTCAACATCTAAAGAAAAATGATTGTCTTCTTGA---GACATAACTCCCATTTTTTGG 41779 |||||| |||| || | ||| ||| ||| || | ||||| || ||||| | || Sbjct 3438637 AAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCCATCCTCTGA 3438578 Query 41780 TATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATTTTCCATG 41839 || || ||||| || || || || || || ||||| ||||| | ||| |||||||||||| Sbjct 3438577 TACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATATTTTCCATG 3438518 Query 41840 AAATCAAACGGATT 41853 || ||||||||||| Sbjct 3438517 AAGTCAAACGGATT 3438504 >seq73 Length=3316092 Score = 111 bits (122), Expect = 2e-19 Identities = 106/136 (78%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| || || || ||||| || |||||||| || || || | Sbjct 2397345 ACCTGAAATTCTCCTGACAAGACCCTGCGCGTGTAGATGTTACTGGTGTAAGGCTCAATG 2397286 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 || |||||||| |||| ||| ||||||||||| ||||| ||||| || || | | || | Sbjct 2397285 GATTCATTATTCCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAA 2397226 Query 71263 CTATTTCTAAGACCAT 71278 || ||||| | ||||| Sbjct 2397225 CTGTTTCTTATACCAT 2397210 Score = 93.3 bits (102), Expect = 6e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 70868 TCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAGCTAGGATCGGCTATGTGAATAT 70927 |||| ||||| || ||||||||||| |||||| |||| | || || || ||||| || | Sbjct 2400521 TCCAGCCGTAGAAGTGCATACTCGTGAGTTTGCCATAGTTGGGCTCAGCAATGTGGATGT 2400462 Query 70928 TCATCGACTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGCCATTTTTATGATCGTCT 70987 | | ||||| |||||||| ||||| || || || || || ||||| || | | |||| Sbjct 2400461 TTAAAGACTGGCTTTGATCAATGAAAGCGCCTCTCTCGGCGGCCATCTTGAGAACAGTCT 2400402 Query 70988 TTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATATCTTCTGGAA 71038 | || | || ||||| | || ||||| | |||| | || || |||| Sbjct 2400401 TCTGAGAGATCTCCCACACCGTCTTATAGAGCTGCTTCAGGTCATCAGGAA 2400351 Score = 91.5 bits (100), Expect = 2e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 71381 CATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAATGCTCCAT 71440 |||| || || || ||||| || | |||||| ||||| || || || || ||||||| Sbjct 2394031 CATACGTTTCATAGGGTCCACATTCCTTGGCTAGGTCACAGCTGGCTTCCAAAGCTCCAT 2393972 Query 71441 AATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCAAATGGAT 71500 ||||||| ||||| || || | ||||| | || ||||| ||||| ||||| || | Sbjct 2393971 AATAAATAGTTTCAAAGATTTGTTTATTCAATAACTGGGCTTCTGGGCTTTCAAAGGGGT 2393912 Query 71501 AATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGTCTGTGTC 71560 | | | || || || || ||||||| ||||| || ||||| || || || | || | Sbjct 2393911 ACCTCATCAGGATGAAAGCATCTGCTAGACCTTGTACCCCAATTCCAATGGGCCGATGGC 2393852 Query 71561 TCTTATTAGA 71570 ||||| || Sbjct 2393851 GTTTATTTGA 2393842 Score = 89.7 bits (98), Expect = 7e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 72022 ACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGC 72081 ||||| ||||| |||||||| ||||||||||| || | || ||||| | || || ||| Sbjct 2391261 ACTCGCTTCATGAAGAGATCCGGAATCCAAAGTGCAAAGAAGAGATCCCGGGCTCGCTGC 2391202 Query 72082 TCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGT 72141 || || || ||||| ||||| || | || |||||| | | || || ||||||| || Sbjct 2391201 TCTTCCTTCCCTGTGTTCTTCTTCAAGTCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 2391142 Query 72142 TCCAAGTATATGGC 72155 |||| ||| || || Sbjct 2391141 TCCAGGTAAATAGC 2391128 Score = 84.2 bits (92), Expect = 3e-11 Identities = 114/159 (72%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 72397 CTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAAC 72456 || |||| || |||| | || || || || || | |||||||| || || |||||| Sbjct 2385018 CTGGACAGCTGTGGACGGTTGGTCCCAGCGTTGAAGAGAGTAGGAGAGGCATGAGTAAAC 2384959 Query 72457 CATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATT 72516 || || ||||| || || ||||| || ||||| || | || ||||| || || || Sbjct 2384958 CACTTCTCAGAAAGCAGGTTGTAGGTTTCAATTGCAGCATCGATATCTTCTTTGTGAATC 2384899 Query 72517 CCTACCGCGACACGCATTAACATATGCTGAGGTCTTTCA 72555 || || | || | ||| ||||||||||| ||||||||| Sbjct 2384898 CCCACAGATACCCTCATCAACATATGCTGTGGTCTTTCA 2384860 >seq61 Length=4506808 Score = 102 bits (112), Expect = 1e-16 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 42089 TCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTA 42148 ||||| || || || | ||| || || || |||||||||||||| ||||| | ||| || Sbjct 586187 TCATCCCTGCTGATGAGTTCATTCGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCTTC 586128 Query 42149 AGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCA 42208 ||||| || |||| |||||||| ||||| ||||| | ||||| || || |||||||| Sbjct 586127 AGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGGCC 586068 Query 42209 ATAAGTCTCTCTCC 42222 | | |||||| || Sbjct 586067 ACCACTCTCTCCCC 586054 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671086054164600