Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq26 179 5e-40 seq42 123 4e-23 seq9 104 3e-17 >seq26 Length=66536344 Score = 179 bits (198), Expect = 5e-40 Identities = 392/575 (68%), Gaps = 14/575 (2%) Strand=Plus/Minus Query 70059 GACAAGAGGGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGT 70118 |||| || || |||||||| ||||| || || ||||||||||| || | ||| | | | Sbjct 25929936 GACAGGAAGGGGATCTGGGCCCAGTTTATGGTTTCCAGTGGAGACATTTTGGCGCAGACT 25929877 Query 70119 ATGTAGACTGCGAGACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAATCATTG 70178 | ||| || |||| || |||||||| || || || || |||| | | | |||| Sbjct 25929876 ACAAAGATATGGAATCAGATTACTCGGGTCAAGGAGTAGACCAGCTGCAAAAAGTGATTG 25929817 Query 70179 ACACTCTCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAG 70238 |||| |||| |||| || || || || ||| | ||||| | ||||| || || Sbjct 25929816 ACACCATCAAAACCAGCCCTGATGACAGAAGAATCATCATGTGTGCCTGGAACCCAAAAG 25929757 Query 70239 ATTTGCACCAAATGGCACTACCACCGTGTCA--CTGTTTGGCTCAGTTTTACTCGTA-CG 70295 || | | || |||||||| || || || || | | || ||| || || ||| || Sbjct 25929756 ATCTTCCCCTGATGGCACTGCCTCCTTGCCATGCCCTCTG--TCAATTCTA--TGTAGCG 25929701 Query 70296 -ATGGCAAATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCC 70354 |||| | |||| ||| | || |||||| | || |||||||| ||||| ||| Sbjct 25929700 AATGGGGAGCTGTCTTGCCAGCTCTACCAGAGGTCGGGAGATATGGGCCTGGGTGTGCCC 25929641 Query 70355 TTTAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAA 70414 || |||||||| |||||| | || | || |||||||||| |||| || ||||| ||| Sbjct 25929640 TTCAACATTGCCAGCTATGCCCTGCTTACCTACATGATTGCACACACCACAGGCCT-AAA 25929582 Query 70415 GCGCA--CGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGC 70472 || || || || || |||||| | || || || || | || | ||||| ||||||| Sbjct 25929581 GC-CAGGGGATTTTGTCCACACCTTGGGAGATGCACATATTTACCTGAATCATATCGAGC 25929523 Query 70473 CATTAAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTA 70532 | | || | || || | || ||||| |||||||| || ||||| | || ||| | Sbjct 25929522 CCCTGAAAATTCAGCTTCAGCGAGAGCCAAGACCTTTCCCAAAGCTCAAAATTCTTCGAA 25929463 Query 70533 AAGTTGAAAATATTGACAGTTTTA-AGTACGAAGATTTTATAATAAAAGGTTACGATCCA 70591 ||||||| | ||||| ||| | ||| ||||| ||| || ||||||| ||||| Sbjct 25929462 AAGTTGAGACAATTGATGATTTCAGAGT-TGAAGACTTTCAGATTGAAGGTTATAATCCA 25929404 Query 70592 TACCCTAAGATTCCCATGGTTCTGGCTGTTTAGAG 70626 | || |||| |||| |||| |||||||| Sbjct 25929403 CATCCAGCGATTAAGATGGAAATGGCCGTTTAGAG 25929369 Score = 149 bits (164), Expect = 9e-31 Identities = 569/870 (65%), Gaps = 39/870 (4%) Strand=Plus/Minus Query 124998 TTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGG 125057 |||||||| || ||||| || ||| | |||||||| || || |||||| ||| ||| Sbjct 31519988 TTTCCCATTGAATACCATGATATCTGGCAGATGTACAAGAAAGCCGAGGCCTTCTTCTGG 31519929 Query 125058 ACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAA 125117 || | || ||||| || || |||||||| | | | | ||| | | ||| || Sbjct 31519928 ACAGCTGACGAGGTGGACCTCTCCAAGGATATTCAACACTAGGAAGCGC---TGA---AA 31519875 Query 125118 ACTGAGCGAGAG----TTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGGAAT 125173 |||| |||||| |||||||| ||| | |||| |||||||| | | ||||| || Sbjct 31519874 CCTGA-CGAGAGACATTTTATATCTCACGTCCTGGCTTTCTTTGCAGCCAGTGATGGCAT 31519816 Query 125174 CGTCAACGACAATCTGTTGACACGATTCTCTCAAGA-GTTGACCATTCCAGAGGTGTCGT 125232 ||||| || || ||| || || || ||||| ||| | || |||||| | Sbjct 31519815 AGTCAATGAAAACCTGGTGGAGCGCTTTAGCCAAGAAGTTCAGG-TTACAGAGGCCCGCT 31519757 Query 125233 GCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACACTGA 125292 | || || || |||||||| || || ||| || || ||||||||| | || | Sbjct 31519756 GTTTCTATGGCTTCCAAATTGCCATGGAAAACAAACATTCTGAAATGTACAGTCTCCTCA 31519697 Query 125293 TTGACATGTACATTCGCGATCCGCAACGTAAACACATG-CTCTTTAACGCAATCGACACG 125351 |||||| |||| ||| | ||| | | || ||||| || || || || || Sbjct 31519696 TTGACA----CATTAAAGATTC-CAAAGAGAGGGAATATCTCTTCAATGCTATTGAGACA 31519642 Query 125352 GTGCCGTCTATACGTAAAA--AGGCTCAATGGGTGATTCGGTGGATC-GATGACGACAAG 125408 |||| | | | | |||| ||||| | |||| | || ||||| | ||| | ||| Sbjct 31519641 ATGCCTTGTGT--GAAAAAGTAGGCTGACTGGGCCCTGCGTTGGATTTGGAGACAAAAAG 31519584 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468 || | || | || ||| | ||||| || || || ||||| | ||||||||| || || Sbjct 31519583 ACTACCTATGGAGAAAGAGTTGTGGCCTTTGCTGCTGTAGAAGACATCTTCTTCTCTGGC 31519524 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 ||||||| | || || ||||||||||| | ||||| ||||| || || || Sbjct 31519523 TCTTTTGCGTCAATATTCTGGCTCAAGAAACAGGGACTGATGCCTGGCCTTACATTTTCC 31519464 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGC 125588 || ||| |||| |||| ||| | ||||||||| ||||||| || |||| | Sbjct 31519463 AAAGAGCTTATTAGCAGAGATGAGCGTTTACACTGTGGCTTTGCCTGCCTGATGTT---C 31519407 Query 125589 AACTATCTGCGTCCCGAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGAT 125648 | | ||| || | || | |||| | || || || || || | | | | Sbjct 31519406 AGGCACCTG-GT-AAGCAAGCCG--CCAGAG-CAAAGAGTACAAGAA-ATCATTATCAAC 31519353 Query 125649 GCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATG 125708 || ||||||||| | || | |||||| || || |||| || || | | || | ||| Sbjct 31519352 GCAGTGAGGATAAAGCAGGTGTTTCTCACGGAGGCCCTGCCTGTGAAGCTCATCAGGATG 31519293 Query 125709 AACTGCAAGCTAATG-TGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT 125767 ||||||| || ||| ||| |||||| || || ||||| || || || ||| | Sbjct 31519292 AACTGCACCCTCATGAAGCG-GTACATCGAATTCGTGGCCGACACGCTTATGCTGGAGCT 31519234 Query 125768 --GATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCA 125825 | || | ||||||||| ||| | | ||||| ||||| ||| || | || ||| Sbjct 31519233 AGGGTT--CAGCAAGATTTCCAAAGTAGAAAATCCTTTTGACTTCGTGGAAAATATTTCA 31519176 Query 125826 CTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 ||||| || ||||| ||||| | |||||| Sbjct 31519175 CTAGAAGGGAAGACAAACTTCCTTGAGAAG 31519146 >seq42 Length=9663327 Score = 123 bits (136), Expect = 4e-23 Identities = 290/430 (67%), Gaps = 17/430 (4%) Strand=Plus/Plus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 ||||| || || || || || || |||||||| || || ||||||| | || || ||| Sbjct 3435652 GTGGCCTTTGCTGCTGTGGAAGGGATCTTCTTCTCTGGCTCTTTTGCGTCAATATTCTGG 3435711 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 |||||||| || ||||| ||||| || || ||| |||||| |||| |||| Sbjct 3435712 CTCAAGAAACGGGGACTGATGCCTGGCCTTACGTTTTCCAACGAGCTTATTAGCAGAGAT 3435771 Query 125550 GAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGC 125609 ||||| ||||||||||||||||| || |||| || | ||| || | | Sbjct 3435772 GAGGGTTTACACTGTGACTTTGCCTGCCTGATGTT---CAGGCACCTG-GTACACA---- 3435823 Query 125610 AGATCCAGCGATGAAAAG-GT-CATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 | || || | |||| || || || || | | | | ||| |||||||||| || | Sbjct 3435824 --AGCCGCCGGAGCAAAGAGTACAAGAA-ATCATTATCAACGCCTTGAGGATAGAGCAGG 3435880 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 ||||||| || || |||| || || | | || || || | ||||| || ||| Sbjct 3435881 AGTTTCTCACGGAGGCCCTGCCTGTGAAGCTCATCGGGATAAGCTGCACCCTGATGAAGC 3435940 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTT--GATTGGCCGCAAGATTTA 125785 | ||||| || || ||||| || | || || ||| | |||| | ||||||||| Sbjct 3435941 ACTACATCGAATTCGTGGCGGACAGGCTTATGCTGGAGCTAGGATT--CAGCAAGATTTT 3435998 Query 125786 CAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTT 125845 ||| | | ||||| ||||| | |||| | || |||||||| || ||||| ||||| Sbjct 3435999 CAAAGTAGAAAATCCGTTTGACTCCATGGAAAATATTTCACTAGAAGGGAAGACAAACTT 3436058 Query 125846 TTTCGAGAAG 125855 || |||||| Sbjct 3436059 CTTTGAGAAG 3436068 >seq9 Length=86001432 Score = 104 bits (114), Expect = 3e-17 Identities = 346/530 (65%), Gaps = 19/530 (4%) Strand=Plus/Minus Query 125330 GCTCTTTAACGCAATCGACACGGTGCCGTCTATACGTAAA-AAGGCTCAATGGGTGATTC 125388 |||||| || || || || || |||| | | | ||| |||||| | |||| | | Sbjct 36370290 GCTCTTCAATGCTATTGAGACAATGCCTTGTGTGGAAAAAGAAGGCTGACTGGGCCCTGC 36370231 Query 125389 GGTGGATCGATGACGACAAGTCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAG 125448 | ||||| | ||| | | || | || | || || | ||||| || || || | | Sbjct 36370230 GTTGGATTGGGGACAAAGAAGCTACCTATGGAGAACGAGTTGTGGCCTTTGCTGCTATGG 36370171 Query 125449 AGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCA 125508 | || ||||||| | || ||||||| | || || ||||||| ||| | ||||| | Sbjct 36370170 AAGGGATCTTCTCT---GGCTCTTTTGCGTCAATATTCTGGCTCAGGAAACTGGGACTGA 36370114 Query 125509 TGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACT 125568 |||| || || ||| |||||| |||| |||| ||||| |||||||||||| Sbjct 36370113 TGCCTGGCCTTACGTTTTCCAACGAGCTTATTAGCAGAGATGAGGGTTTACACTGTGACT 36370054 Query 125569 TTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGT-GCAGATCCAGCGATGAAAAG 125627 ||||| || |||| | || ||| | | || || | || || | ||| Sbjct 36370053 TTGCCTGCCTGATGTTCAGGCAC---CTGGTACACAAGCCGCCGGAGCAAAGAGTACAAG 36369997 Query 125628 GTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTA 125687 |||| ||| ||| || ||||||||||| || |||||||| || || |||| Sbjct 36369996 AA-ATCATCATC--AAC----GCAGTGAGGATAGAGCAGGAGTTTCTCACGGAGGCCCTG 36369944 Query 125688 CCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCA 125747 || || | | || || || | ||||| || ||| | ||||| || || ||||| Sbjct 36369943 CCTGTGAAGCTCATCGGGATAAGCTGCACCCTGATGAAGCACTACATCGAATTCGTGGCG 36369884 Query 125748 GATCGTCTACTGTACGAGTT--GATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTTG 125805 || | || || ||| | |||| | ||||||||| ||| | | ||||| |||| Sbjct 36369883 GACAGGCTTATGCTGGAGCTAGGATT--CAGCAAGATTTTCAAAGTAGAAAATCCGTTTG 36369826 Query 125806 ATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 | | |||| | || |||||||| || ||||| ||||| || |||||| Sbjct 36369825 ACTCCATGGAAAATATTTCACTAGAAGGGAAGACAAACTTCTTTGAGAAG 36369776 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741000517374600