Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq33 93.3 3e-14 seq17 91.5 9e-14 seq38 84.2 1e-11 >seq33 Length=41749222 Score = 93.3 bits (102), Expect = 3e-14 Identities = 151/216 (70%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||||||||| | || ||||| ||||| || ||||| ||||||||| | | || Sbjct 34672190 CAACACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATC 34672249 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| ||||| ||| || || | | ||||| || | || || ||||| || || Sbjct 34672250 TTCCAGCTGCTTGCCAGCGAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 34672309 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 ||| |||| | || ||| || ||||| ||||| ||| || || || || Sbjct 34672310 CTGGATCTTGGCCT---TGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGAT 34672366 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||||||||||| || || |||||||| ||||| Sbjct 34672367 GGTTTTTCCCGTAAGGGTCTTCACGAAAATCTGCAT 34672402 >seq17 Length=65020687 Score = 91.5 bits (100), Expect = 9e-14 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 |||||||||||| | | ||||| ||||| || ||||| ||||||||| | | | || Sbjct 35302172 CAACACCAAATGAAGGATGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGTCATC 35302231 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| ||||| ||| ||| || | | ||||| || | || || ||||| || || Sbjct 35302232 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 35302291 Query 33277 GCTAATCGCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGT 33336 ||| ||| || ||| || ||||| | ||| ||| || || || || || Sbjct 35302292 CTGGATCTTGGCTTTGACATTTTCTATAGTGTCCGAGAGTTCAACCTCGAGCGTGATGGT 35302351 Query 33337 TTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 |||||| ||||| || || |||||||| ||||| Sbjct 35302352 TTTTCCTGTAAGGGTCTTCACGAAAATCTGCAT 35302384 >seq38 Length=14253900 Score = 84.2 bits (92), Expect = 1e-11 Identities = 149/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 33157 CAACACCAAATGCAATGTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTC 33216 || ||||||||| | || ||||| ||||| || ||||| ||||||||| | | || Sbjct 298697 CAGCACCAAATGAAGGGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTACGGCCATC 298756 Query 33217 ATCCAATTGCTTTCCACTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC 33276 |||| ||||| ||| ||| || | | ||||| || | || || ||||| || || Sbjct 298757 TTCCAGCTGCTTGCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 298816 Query 33277 GCTAATC---GCCTGTTTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTAT 33333 ||| |||| | || ||| || ||||| ||||| ||| || | || || Sbjct 298817 CTGGATCTTGGCCT---TGACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAACGTGAT 298873 Query 33334 CGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCAT 33369 ||||| ||| |||| || ||||||||||| ||||| Sbjct 298874 GGTTTTCCCCTTAAGGGTCTTTACGAAAATCTGCAT 298909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318752987878830