Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq4 307 9e-79 seq26 257 1e-63 seq87 120 3e-22 seq61 93.3 4e-14 seq42 89.7 4e-13 >seq4 Length=96435083 Score = 307 bits (340), Expect = 9e-79 Identities = 615/903 (68%), Gaps = 20/903 (2%) Strand=Plus/Plus Query 12841 ATTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTT 12900 ||||||||| || ||| | ||||| |||| |||| || ||||| |||||||| || Sbjct 65463892 ATTTGACATCACCCCCATCCTCTGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTT 65463951 Query 12901 TCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTT-----TTCGAACAATAGTAT 12955 |||||||| |||||||||||||| || || || |||||| || ||| ||| Sbjct 65463952 TCCTTCTAGTGAAATATTTTCCATGAAGTCAAATGGATTTTCTACTTTGAA-AAT----C 65464006 Query 12956 TTTTTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATT 13015 || | |||||| || || | | ||||| || || || || |||||||| ||||| Sbjct 65464007 TTGCTGAACCCTAGCTCCAGCATAAGCCTGTCCGCCACGAATTCGATGTACTGCTTCATC 65464066 Query 13016 AAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCT 13075 | | |||||||| || || | || ||||||| || || || | ||| | | ||| Sbjct 65464067 AGGGCGCAGTTCATCCCGATGAGCTTCACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCT 65464126 Query 13076 ATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATT---TGAT 13132 | ||||| | ||||| || ||| || | | ||| || || || | Sbjct 65464127 AGCCTCACTGCGTTGATAATGATTTCTTGTACTCTTTGCTC---CGGCGGCTTGTGTACC 65464183 Query 13133 AGATGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGC 13192 || ||| | ||||||| || ||||| |||||| || || |||||||| || || ||| Sbjct 65464184 AGGTGCCTGAACATCAGGCAGGCAAAGCAACAGTGTAAACCCTCATCTCTGCTAATAAGC 65464243 Query 13193 TCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCA 13252 ||||| ||||| || || || ||||| || || ||||| || | ||| ||||| | || Sbjct 65464244 TCGTTGGAAAACGTAAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGACACA 65464303 Query 13253 AACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATA 13311 || || || || || | || ||||| || || ||||| || | |||| | ||| ||||| Sbjct 65464304 AAGGAGCCAGAGAAGAGGATCCCTTCCACAGCAGCAAAGGCCA-CAACTCGTTCTCCATA 65464362 Query 13312 CGTA-CTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGT 13370 ||| || ||| | | | ||||| |||||||| || || | ||| || || Sbjct 65464363 GGTAGCTTCTTTGTCCCCCAATCCAACGCAGGGCCCAGTCGGCCTTCTTTTTCACACAAG 65464422 Query 13371 TCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTAT 13430 ||| | || || || || || | ||| | | || || ||| ||| ||||||| Sbjct 65464423 GCATTGTCTCAATAGCATTGAAGAGATATTCCCTCTCTTTGGAATCTTTAATGTAAGTAT 65464482 Query 13431 CTATCAATAAGCTATACATTTCTGAATG-AATATTTTCCATCGCTATTTGGAAACCATAA 13489 | || | | || |||||||| ||||| || |||||||| || |||||||| ||||| Sbjct 65464483 CGATGAGGAGACTGTACATTTCAGAATGTTATGTTTTCCATGGCAATTTGGAAGCCATAG 65464542 Query 13490 AAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTA 13549 ||||| | ||||||| ||||||||||| | || | || | | |||||| || Sbjct 65464543 AAACAGCGGGCCTCTGTAACCTGAACTTCTTGGCTGAAGCGCTCCACCAGGTTTTCATTG 65464602 Query 13550 ACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTT 13609 ||||| || ||||| |||||||| ||||| || | ||| ||||| | | | |||| Sbjct 65464603 ACTATGCCATCACTCGCAGCAAAGAAAGCCAGGACGTGAGATATAAAATGTCTCTCGTCG 65464662 Query 13610 TCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAA 13669 | || | | ||| | | ||| ||| || || | || ||||||||| | ||||| Sbjct 65464663 GGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCGACCTCCTCAGCCGTCCAG 65464722 Query 13670 AAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACA 13729 || ||||| | || ||||| |||||| ||| ||||| | || | |||||||| || Sbjct 65464723 AAGGAAGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTATTCGATGGGAAAGACC 65464782 Query 13730 ACG 13732 ||| Sbjct 65464783 ACG 65464785 >seq26 Length=66536344 Score = 257 bits (284), Expect = 1e-63 Identities = 602/900 (67%), Gaps = 19/900 (2%) Strand=Plus/Plus Query 12841 ATTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTT 12900 |||||| || || ||| | ||||| || | |||| || |||| |||||||| || Sbjct 31519107 ATTTGAAATCACCTCCATCCTCTGATACTCACCCACTCGCTTCTCAAGGAAGTTTGTCTT 31519166 Query 12901 TCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTT- 12959 ||||||| ||||||||||||| || || |||||||||| || | | | | || Sbjct 31519167 CCCTTCTAGTGAAATATTTTCCACGAAGTCAAAAGGATTTT--CTACTTTGGAAATCTTG 31519224 Query 12960 -TACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018 | |||||| || || | | |||| || || || || |||||| | ||||| | Sbjct 31519225 CTGAACCCTAGCTCCAGCATAAGCGTGTCGGCCACGAATTCGATGTACCGCTTCATGAGG 31519284 Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078 |||||||| | || | || ||||||| || || || | ||| | | ||| Sbjct 31519285 GTGCAGTTCATCCTGATGAGCTTCACAGGCAGGGCCTCCGTGAGAAACACCTGCTTTATC 31519344 Query 13079 TCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGAT---TTGATAGA 13135 ||||| | ||||| || ||| || | | ||| ||| || | || || Sbjct 31519345 CTCACTGCGTTGATAATGATTTCTTGTACTCTTTGCTC---TGGCGGCTTGCTTACCAGG 31519401 Query 13136 TGCTTAAACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCG 13195 ||| | ||||||| || ||||| ||||||| || | |||||||| || || ||||| Sbjct 31519402 TGCCTGAACATCAGGCAGGCAAAGCCACAGTGTAAACGCTCATCTCTGCTAATAAGCTCT 31519461 Query 13196 TTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAAC 13255 || |||||||| || || ||||| || || |||| || | ||| ||||| | ||||| Sbjct 31519462 TTGGAAAATGTAAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAGAATATTGACGCAAAA 31519521 Query 13256 GAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAAC-CTTTCACCATACGT 13314 || || || || || || |||| || || ||||| || | |||| ||||| ||||| || Sbjct 31519522 GAGCCAGAGAAGAAGATGTCTTCTACAGCAGCAAAGGCCA-CAACTCTTTCTCCATAGGT 31519580 Query 13315 ACTATTTTT-ACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCA 13373 | | ||||| ||| ||||| |||||||| || | | ||| || || || Sbjct 31519581 AGTCTTTTTGTCTCCAAATCCAACGCAGGGCCCAGTCAGCCTACTTTTTCACACAAGGCA 31519640 Query 13374 TATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAA-GTATCT 13432 | | || || || || || | ||| || ||| || | || | ||| || || Sbjct 31519641 TTGTCTCAATAGCATTGAAGAGATA-----TTCCCTCTCTTTGGAATCTTTAATGTGTCA 31519695 Query 13433 ATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAA 13492 || | | || |||||||| ||||| | |||||||| || |||||||| ||||| ||| Sbjct 31519696 ATGAGGAGACTGTACATTTCAGAATGTTTGTTTTCCATGGCAATTTGGAAGCCATAGAAA 31519755 Query 13493 CATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACT 13552 || | ||||||| ||||||||||| | ||| | || | | |||||| || ||| Sbjct 31519756 CAGCGGGCCTCTGTAACCTGAACTTCTTGGCTAAAGCGCTCCACCAGGTTTTCATTGACT 31519815 Query 13553 ATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCT 13612 || || ||||| || ||||| ||||| || | ||| ||||| | | | |||| | Sbjct 31519816 ATGCCATCACTGGCTGCAAAGAAAGCCAGGACGTGAGATATAAAATGTCTCTCGTCAGGT 31519875 Query 13613 GACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAA 13672 || | | | | | | ||| ||| || || | || ||||| ||| | ||||| || Sbjct 31519876 TTCAGCGCTTCCTAGTGTTGAATATCCTTGGAGAGGTCCACCTCGTCAGCTGTCCAGAAG 31519935 Query 13673 GAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACACAACG 13732 | || | || ||||| |||||| ||| ||||| | || |||||||||| |||||| Sbjct 31519936 AAGGCCTCGGCTTTCTTGTACATCTGCCAGATATCATGGTATTCAATGGGAAAGACAACG 31519995 >seq87 Length=2570995 Score = 120 bits (132), Expect = 3e-22 Identities = 326/495 (66%), Gaps = 3/495 (1%) Strand=Plus/Plus Query 13237 CCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTAT 13296 ||| ||||| | |||| || || || || || || ||||| || || ||||| | | Sbjct 1819201 CCAGAATATTGACACAAAAGAGCCAGAGAAGAAGATCCCTTCTACAGCAGCAAAGGTCA- 1819259 Query 13297 CAAC-CTTTCACCATACGTACTATTTTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTT 13355 |||| | ||| ||||| ||| || ||| | | ||||| | || ||||| || | Sbjct 1819260 CAACTCGTTCTCCATAGGTAGCATCTTTGTCCCCAATCCAATGCACGGTCCAGTCGGCCT 1819319 Query 13356 TTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGT 13415 | | ||| || || ||| | || || || || | | ||| | | || || | Sbjct 1819320 TCTTTTTCACACAAGGCATTGTCTCAATAGCATTGACAAGATATTCCCTCTCTTTGGAAT 1819379 Query 13416 CTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTA 13475 || ||| || || | || | | || |||||||| ||||| || |||||||| || | Sbjct 1819380 CTTTAATGTAGGTGACAATGAGGAGACTGTACATTTCAGAATGTATGTTTTCCATGGCAA 1819439 Query 13476 TTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTG 13535 ||||||| ||||| ||||| || ||||||| ||||||||||| | ||| | || Sbjct 1819440 TTTGGAAGCCATAGAAACAGCTGGCCTCTGTAACCTGAACTTCTTGGCTAAAGCACTCGA 1819499 Query 13536 CTAAGTTTTCGTTAACTATCCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAA 13595 | | ||||| || |||| || ||||| | |||| ||||| || | ||| |||| Sbjct 1819500 CCAGATTTTCATTGACTAATCCATCACTCGTCACAAAGAAAGCCAGGACGTGGGATATAA 1819559 Query 13596 AttttttttCGTTTTCTGACAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCT 13655 | | | | |||| | || | | ||| | | ||| ||| || || | || |||| Sbjct 1819560 AATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTTGAATATCCTTGGAGAGGTCCACCT 1819619 Query 13656 CCTCAACGGTCCAAAAAGAAGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAA 13715 ||||| | |||| || || || | || ||||| ||| || ||| ||||| | || Sbjct 1819620 CCTCAGCCATCCAGAAGGAGGCCTCGGCTTTCTTGTAC-TCTGCCAGATATCATGGTACT 1819678 Query 13716 CAATGGGAAACACAA 13730 | || ||||| |||| Sbjct 1819679 CGATAGGAAAGACAA 1819693 >seq61 Length=4506808 Score = 93.3 bits (102), Expect = 4e-14 Identities = 72/86 (84%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||||||||||| |||||||| || ||||||||||| ||| ||||||||||||| || | Sbjct 591647 AATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACAGTTCATTCCGATGAGG 591588 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 ||||||| ||||||||| ||||| Sbjct 591587 CCGACAGGCAAAGCTTCTGTCAAAAA 591562 >seq42 Length=9663327 Score = 89.7 bits (98), Expect = 4e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 13342 GGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAATAAATAAtt 13401 |||||||| || || | ||| || || ||| | || || || || || | ||| | Sbjct 3435478 GGCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAAGAGATATTC 3435419 Query 13402 tttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGCTATACATTTCTGAATGAAT 13461 | || || ||| ||| |||||||| || | | || |||||||| ||||| || Sbjct 3435418 CCTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTCAGAATGTAT 3435359 Query 13462 ATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATACCTGAACTTC 13518 |||||||| || |||||||| ||||| ||||| | ||||||| ||||||||||| Sbjct 3435358 GTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCTGAACTTC 3435302 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 12841 ATTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTT 12900 ||||||||| || ||| | ||||| |||| |||| || ||||| |||||||| || Sbjct 3438602 ATTTGACATCACCCCCATCCTCTGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTT 3438543 Query 12901 TCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTT 12941 ||||||| |||||||||||||| || || || ||||||| Sbjct 3438542 CCCTTCTAGTGAAATATTTTCCATGAAGTCAAACGGATTTT 3438502 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430949124791670