Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq5 93.3 4e-14 >seq5 Length=88288230 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 128874 GGCTACCTCGGGTGCCAGGCACTCTCTGAGATGATACAGTTTTACTTGGAAGAGGTGATG 128933 || ||| | || ||||| | | || || ||||| ||||||||| ||| |||||||||| Sbjct 21499151 GGTTACTTGGGTTGCCAAACCTTGTCAGAAATGATCCAGTTTTACCTGGTAGAGGTGATG 21499210 Query 128934 CCGCAGGCGGAAAATCACGGGCCGGACATCAAAGAGCACGTTAACTCGCTGGGAGAAAAG 128993 || ||||| || || || || || || ||||| ||||| | | ||| |||||||| ||| Sbjct 21499211 CCCCAGGCAGAGAACCATGGCCCAGAAATCAAGGAGCATTTGAGCTCCCTGGGAGAGAAG 21499270 Query 128994 CTCAAAACGCT 129004 || || || || Sbjct 21499271 CTGAAGACCCT 21499281 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447714943765200