Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq26 266 2e-66 seq22 98.7 7e-16 seq8 93.3 3e-14 >seq26 Length=66536344 Score = 266 bits (294), Expect = 2e-66 Identities = 419/592 (71%), Gaps = 6/592 (1%) Strand=Plus/Plus Query 25387 TGGGAAAGGGTCTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGT 25446 ||||||||| ||| ||||| | || |||||| | ||||| || || | |||| ||||| Sbjct 25929482 TGGGAAAGG-TCTTGGCTCTCGCTGAAGCTGAATTTTCAGGGGCTCGATATGATTCAGGT 25929540 Query 25447 AGACGTGAGCGTCTCCCAGAGTGTGGACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAG 25506 | | || || ||||||| ||||||||||| || || || | ||| || || || | Sbjct 25929541 AAATATGTGCATCTCCCAAGGTGTGGACAAAATCCCCTGGCTTTAGGCCTGTGGTGTGTG 25929600 Query 25507 CCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGT 25566 | |||||||| || || || |||||||| ||||| ||||| || || | ||||| | Sbjct 25929601 CAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGGCACACCCAGGCCCATAT 25929660 Query 25567 CCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTC-GTCGCTCACGTAAAACTGACA 25625 | |||||||||||||||||||| || || ||||| | ||||| || || || ||||| Sbjct 25929661 -CTCCCGACCTCTGGTAGAGCTGGCAAGACAGCTCCCCATTCGCT-ACATAGAATTGACA 25929718 Query 25626 CATGGTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACAC 25685 | || | ||| ||||| || || || ||| | ||||| ||||||||||| |||| Sbjct 25929719 GAGGGCATGGCAAGGAGGCAGTGCCATCAGGGGAAGATCTTTTGGGTTCCAGGCACACAT 25929778 Query 25686 GATGATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATC 25745 |||||| | ||||| || ||| || |||| || ||||||||||| || Sbjct 25929779 GATGATTCTTCTGTCATCAGGGCTGGTTTTGATGGTGTCAATCACTTTTTGCAGCTGGTC 25929838 Query 25746 CACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCA 25805 || || |||||||| |||| ||| || |||| ||||| || |||| ||||| Sbjct 25929839 TACTCCTTGACCCGAGTAATCTGATTCCATATCTTTGTAGTCTGCGCCAAAATGTCTCCA 25929898 Query 25806 CTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCA-AAGCCCCTCTTAT 25864 |||||| || || || || || || || || || | | |||| | || ||| | | Sbjct 25929899 CTGGAAACCATAAACTGGGCCCAGATCCCCTTCCTGTC-GTGCAGAGAATCCCAGGCTGT 25929957 Query 25865 CCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTT 25924 ||| ||| |||| ||| |||||||| |||||||| | || || || ||| || |||| Sbjct 25929958 CCAGAAAATCTCGGGACCCATTGGCATCCCAGATTCTCACTCCTTTGGAGGACAGTTCTT 25930017 Query 25925 TGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCCGTGACGGCCTT 25976 | | |||||||| || ||| |||||||||| ||| || ||| |||| Sbjct 25930018 TAGCATTTGTGGATCCCTTGATAAACCACAGCAATTCCTCCAAAACGCCCTT 25930069 >seq22 Length=61813736 Score = 98.7 bits (108), Expect = 7e-16 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| ||||||| |||| ||||||||||| || || || || || ||||| Sbjct 17833919 CATATCTTTGTAGTCTGCTCAAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGGTC 17833978 Query 25833 TCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 || || | | |||| | || ||| | | |||| ||| ||| ||| |||||||| | Sbjct 17833979 CCCTTCCTGTC-GTGCAGAGAATCCCATGCTGTCCAGAAAAACTCGGGACCCATTGGCAT 17834037 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 25951 ||||||| | || || || ||| || ||||| | |||||| | ||| ||| |||| Sbjct 17834038 CCCAGATTCTCACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGCATCCTTTGATAAACC 17834097 Query 25952 ACAGCAGCTCC 25962 |||||| |||| Sbjct 17834098 ACAGCAACTCC 17834108 >seq8 Length=88571779 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| ||||| || |||| ||||||||||| || || || || || || || Sbjct 15948542 CATATCTTTGTAGTCTGCGCCAAAATGTCTCCACTGGAAACCATAAACTGGGCCCAGATC 15948601 Query 25833 TCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 || || | | |||| | || ||| | |||| ||| |||| ||| |||||||| | Sbjct 15948602 CCCTTCCTGTC-GTGCAGAGAATCCCAGGCTGTCCAGAAAATCTCGGGACCCATTGGCAT 15948660 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACC 25951 ||||||| | || || || ||| || ||||| | |||||||| || ||| |||| Sbjct 15948661 CCCAGATTCTCACTCCTTTGGAGGACAGTTCTTTAGCATTTGTGGATCCCTTGATAAACC 15948720 Query 25952 ACAGCAGCTCCGCCGTGACGGCCTT 25976 |||||| ||| || ||| |||| Sbjct 15948721 ACAGCAATTCCTCCAAAACGCCCTT 15948745 Score = 89.7 bits (98), Expect = 3e-13 Identities = 123/168 (73%), Gaps = 3/168 (2%) Strand=Plus/Plus Query 25490 TAGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGG 25549 ||| || || | || || |||||||| || || || |||||||| ||||| ||||| Sbjct 15942880 TAGGCCTGTGATGTGTGCAATCATGTAGGTAAGCAGGGCATAGCTGGCAATGTTGAAGGG 15942939 Query 25550 TACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTC-GTCG 25608 || || | ||||| || ||| ||||||||||||||||| || || ||||| | ||| Sbjct 15942940 CACACCCAGGCCCATATCTCCC-GACCTCTGGTAGAGCTGGCAGGACAGCTCCCCATTCG 15942998 Query 25609 CTCACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAGG 25656 || || || || ||||| | || | ||| ||||| || || || ||| Sbjct 15942999 CT-ACATAGAATTGACAGAGGGCATGGCAAGGAGGCAGTGCCATCAGG 15943045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340111338719955