Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq5 104 3e-17 >seq5 Length=88288230 Score = 104 bits (114), Expect = 3e-17 Identities = 107/140 (76%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 10137 TCAAGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAG 10196 || |||| ||| |||| || || || |||| |||||||||||||||||||||| || | Sbjct 21499146 TCTAGGGTTACTTGGGTTGCCAAACCTTGTCAGAAATGATCCAGTTTTACCTGGTAGAGG 21499205 Query 10197 TAATGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCG 10256 | ||||| ||||| || || || | ||| | ||| ||||| ||| ||| ||||| | Sbjct 21499206 TGATGCCCCAGGCAGAGAACCATGGCCCAGAAATCAAGGAGCATTTGAGCTCCCTGGGAG 21499265 Query 10257 AGAATCTAAAGACCCTAAGG 10276 |||| || |||||||| ||| Sbjct 21499266 AGAAGCTGAAGACCCTCAGG 21499285 Score = 95.1 bits (104), Expect = 1e-14 Identities = 72/85 (85%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| || || ||||| |||||||| ||||||| |||||||||||| || || |||| | Sbjct 21501247 AGCTCCAAGAGAAAGGTGTCTACAAGGCCATGAATGAATTTGACATCTTCATCAACTGCA 21501306 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||||||||||||||||| || || Sbjct 21501307 TAGAAGCATACATGACCATCAAGAT 21501331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547335854409600