Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq5 150 3e-31 seq3 127 3e-24 >seq5 Length=88288230 Score = 150 bits (166), Expect = 3e-31 Identities = 205/286 (72%), Gaps = 0/286 (0%) Strand=Plus/Minus Query 8690 AACGGACACCCTTTGACGTTGCTACAGACTAGAGACTGGATAGTTGCACTCTTGACGATC 8749 || ||||| || || || || |||||| |||||||| || | ||| | |||| ||| Sbjct 40225213 AAGGGACAACCCTTCACATTATTACAGATGAGAGACTGAATGGAGGCAGTGTTGATAATC 40225154 Query 8750 CCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACG 8809 ||| ||||| ||||| || || ||||| || |||||||| ||| || |||||| Sbjct 40225153 TTAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTACTGCGGAGAACAGATGGGA 40225094 Query 8810 TTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAG 8869 || |||| || ||||| | ||| || || || || || || | ||| |||| || ||| Sbjct 40225093 TTACCCATAAGTCCTTTCAAGGAGAATGGTGCTCCAAGTTCTACCATGGTCTCCCCAAAG 40225034 Query 8870 ATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATG 8929 || || | ||||| ||||||||||||| | | | |||| ||||| || |||||| Sbjct 40225033 ATAGCATCTGGACGTGGCTTTTCCACCAGCAGGGCAGGATACAGCTCCATGGCATCGATG 40224974 Query 8930 TCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || | ||| ||||| | || ||||| |||||||| ||||||| Sbjct 40224973 TCACTGTAGAGGGCTTCCAACTCTGCAGCCATTTCCTTCTCTCCTG 40224928 Score = 125 bits (138), Expect = 1e-23 Identities = 162/224 (72%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 9634 GTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACACT 9693 ||||| || || |||| || ||| || ||||| || |||| || ||||| |||||| Sbjct 40223676 GTCTGGAAGAGCCGTTCATCGTCCCACTCAGGATGCTCCTGTTTGAGCACATCACACACT 40223617 Query 9694 CTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAAAA 9753 |||||||| |||| | |||||| || || |||||||| ||||||||||| || ||||| Sbjct 40223616 CTGTTGTGCTCCCGCAACCAGATGGTGGCATACATCATCAGACCAGGCACTAGACCAAAG 40223557 Query 9754 GCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9813 |||| || || || || | | | || || || | || || |||||||| | Sbjct 40223556 ACCTCCTGCCCCACTGCAAACTGTAGATGCTCAGGGGTGTGAGGGGGGTAGATCATCTCT 40223497 Query 9814 ACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAAT 9857 |||||| |||||||||| ||| ||||||| || || |||| Sbjct 40223496 ACCTGGGTGTCTTTGACCGTGGGAGGATACACCTCTCCACCAAT 40223453 Score = 98.7 bits (108), Expect = 1e-15 Identities = 117/159 (74%), Gaps = 0/159 (0%) Strand=Plus/Minus Query 10028 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 10087 |||||||||||| ||||||||| ||||| | || |||||| | ||| ||| | || Sbjct 40222326 TCTTACCCCATGGCCCAGTCCTCGGGTGAACCCAGGTCCTCGCTTCTGATCTGTCTTGAA 40222267 Query 10088 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 10147 |||||| || ||||| || ||| |||| || || ||||| | || | ||| || ||||| Sbjct 40222266 AAACTGATGAGTGAAGTGCTGGGCAAAGAATGCGAACATCATATTCGAGCCTTGAGGATC 40222207 Query 10148 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCACAAC 10186 || |||| | |||| |||||| ||| |||| ||| Sbjct 40222206 AGGGATGAACTTTCTCCTTAGAAGAACTTTGTCCAGAAC 40222168 Score = 86.0 bits (94), Expect = 9e-12 Identities = 106/145 (73%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 10288 CACCTTTGACCCCAAGAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCGT 10347 ||||||| || || | ||||| || || |||| | || ||||| || || | || Sbjct 40221601 CACCTTTCACACCCATGGGAGTCGGGCAGTCGTCGGCTACAGGAGGAAGTGCTCTGGTGT 40221542 Query 10348 AATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTAGATGG 10407 | |||||||| |||||||| ||||||||| || ||| | |||| | |||||| | | Sbjct 40221541 AGTAGGAGAGGTTGGAGAAGGCTTCCCAGTTTTTGTAACCATAGTGCATGTTGTAAGTTG 40221482 Query 10408 GAGGGCTGTCAATCAAATCGGATCT 10432 | || ||||||||||||| ||||| Sbjct 40221481 GCGGACTGTCAATCAAATGTGATCT 40221457 >seq3 Length=92994323 Score = 127 bits (140), Expect = 3e-24 Identities = 162/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 8753 AACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAGCAGATGACGTTC 8812 || ||||| || || ||||| |||||||| ||||| || | || || || ||| ||| Sbjct 40183810 AAGCCCACATCACCACCGAATGTGCTGGGCTTCCAATACTCTGGAGAACAAATGGGATTC 40183869 Query 8813 GCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTCTCACCGAAGATG 8872 | | ||| || ||||||||||| |||||||| | ||| | |||||||| || |||||| Sbjct 40183870 CCTAGGAGACCCTTGAGGGAAAAGGGAGCCCCAATCTCTATCATGCTCTCCCCAAAGATG 40183929 Query 8873 GCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACAGCCTCGATGTCT 8932 | |||||| || |||||||| | || || | ||| ||||| | || |||||||| Sbjct 40183930 GAGTTGGGCTGGCACTTTTCCAGAAGCAACCCCGGGTAGAACTCTAAGGCATCGATGTCA 40183989 Query 8933 CCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCTG 8975 || || || || | || || || || ||||| ||||||| Sbjct 40183990 CCATACAGCTCCTCCAACTCAGCTGCCATCTCCTTCTCTCCTG 40184032 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708468693692400