Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Microtus_20ochrogaster_20[refseq_20GCF_5F000317375.1_202012-12-07] 6,335 sequences; 2,287,340,943 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq4 192 6e-44 seq26 161 1e-34 seq42 114 1e-20 seq9 109 6e-19 seq78 89.7 5e-13 seq61 89.7 5e-13 >seq4 Length=96435083 Score = 192 bits (212), Expect = 6e-44 Identities = 604/934 (65%), Gaps = 8/934 (1%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 |||| | | || |||||||| || | |||| ||| ||| || |||||||| | ||| Sbjct 65463848 TTTACTCAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCC 65463907 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| || | |||| || || || || |||||||||||||| | ||| ||| Sbjct 65463908 ATCCTCTGATACTCGCCCACTCGCTTCTCAAAGAAGTTTGTCTTTCCTTCTAGTGAAATA 65463967 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||| || |||||||||||||| ||| || || || | | || || || | Sbjct 65463968 TTTTCCATGAAGTCAAATGGATTTTCTACTTTGAAAATCTTGCTGAACCCTAGCTC-CAG 65464026 Query 21302 AATAA-TCTATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 |||| || || || || ||||| || || || ||| | | || ||||| ||||| Sbjct 65464027 CATAAGCCTGTCCGCCACGAATTCGATGTACTGCTTCATCAGGGCGCAGTTCATCCCGAT 65464086 Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420 | || ||||| || || | || | ||| | |||| || || | | ||| Sbjct 65464087 GAGCTTCACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTAGCCTCACTGCGTTGATAAT 65464146 Query 21421 TATATTTATTATCCTAGATGTACTAGGGG--GATACAATAATTGTTTAAACATCAAACAT 21478 |||| || | || || | | || | | | || | ||||||| || Sbjct 65464147 --GATTTCTTGTACTCTTTGCTCCGGCGGCTTGTGTACCAGGTGCCTGAACATCAGGCAG 65464204 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 ||||| ||| || ||||| ||||| || || || | || || ||||| || | || Sbjct 65464205 GCAAAGCAACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCA 65464264 Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATG 21598 ||||| | ||| | || || | ||| ||||||||| |||| | || || |||| || Sbjct 65464265 GGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGACACAAAGGAGCCAGAGAAGAGGATC 65464324 Query 21599 CCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTAT-CCAATAT 21657 || || || |||||||| || || | |||||| || || |||| |||||| | || || Sbjct 65464325 CCTTCCACAGCAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCCAAT 65464384 Query 21658 CCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAA 21717 ||| ||||| | ||||| | ||| | |||| ||||| |||||||| || || Sbjct 65464385 CCAACGCAGGGCCCAGTCGGCCTTCTTTTTCACACAAGGCATTGTCTCAATAGCATTGAA 65464444 Query 21718 AAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTC 21777 |||| | | || | ||| | ||| ||| |||||||| Sbjct 65464445 GAGATATTCCCTCTCTTTGGAATCTTTAATGTAAGTATCGATGAGGAGACTGTACATTTC 65464504 Query 21778 AGAATG-TATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATT 21836 |||||| ||| ||||| || || || || || || || ||||| | ||||||| | | Sbjct 65464505 AGAATGTTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCT 65464564 Query 21837 GAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAA 21896 |||| || || || | ||| ||||||||| ||||| |||||||| || |||| Sbjct 65464565 GAACTTCTTGGCTGAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTCGCAGCAA 65464624 Query 21897 AAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTA 21956 | || |||| | | |||||||| || |||| | | | || ||| | | Sbjct 65464625 AGAAAGCCAGGACGTGAGATATAAAATGTCTCTCGTCGGGTTTCAGCGCTTCCCAGTGTT 65464684 Query 21957 ATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTAT 22016 | ||| || || | || || || |||| ||||| ||| ||| || || || | Sbjct 65464685 GAATATCCTTGGAGAGGTCGACCTCCTCAGCCGTCCAGAAGGAAGCCTCGGCTTTCTTGT 65464744 Query 22017 ACATAATCCAGATATCATTATATATTATTGGAAA 22050 |||| ||||||||||| ||| || ||||| Sbjct 65464745 ACATCTGCCAGATATCATGGTATTCGATGGGAAA 65464778 >seq26 Length=66536344 Score = 161 bits (178), Expect = 1e-34 Identities = 599/934 (64%), Gaps = 13/934 (1%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 |||| | | || |||||||| || | ||| ||| ||| || ||||| || | || Sbjct 31519063 TTTACTCAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGCTGAATTTGAAATCACCTCC 31519122 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| |||| |||| || || | || |||||||| ||||| | ||| ||| Sbjct 31519123 ATCCTCTGATACTCACCCACTCGCTTCTCAAGGAAGTTTGTCTTCCCTTCTAGTGAAATA 31519182 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 ||||| || ||||| |||||||| ||| | || || | | || || || | Sbjct 31519183 TTTTCCACGAAGTCAAAAGGATTTTCTACTTTGGAAATCTTGCTGAACCCTAGCTCC-AG 31519241 Query 21302 AATAATC-TATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 |||| | | || || || ||||| || || | ||| | || ||||| | ||| Sbjct 31519242 CATAAGCGTGTCGGCCACGAATTCGATGTACCGCTTCATGAGGGTGCAGTTCATCCTGAT 31519301 Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420 | || ||||| || || | || | ||| | | ||| || || | | ||| Sbjct 31519302 GAGCTTCACAGGCAGGGCCTCCGTGAGAAACACCTGCTTTATCCTCACTGCGTTGATAAT 31519361 Query 21421 TATATTTATTATCCTAGATGTACTAGGGGGATAC--AATAATTGTTTAAACATCAAACAT 21478 || || || | || || || | || | | | | || | ||||||| || Sbjct 31519362 GAT--TTCTTGTACTCTTTGCTCTGGCGGCTTGCTTACCAGGTGCCTGAACATCAGGCAG 31519419 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 ||||| |||| || |||| ||||| || || || | || || |||||||| | || Sbjct 31519420 GCAAAGCCACAGTGTAAACGCTCATCTCTGCTAATAAGCTCTTTGGAAAATGTAAGGCCA 31519479 Query 21539 GGCATTAATCCTCTCTTTTTTAA-CCAAAATATTGACGCAAATGCTCCTGAAAAGAAAAT 21597 ||||| | ||| || ||| || | ||| |||||||||||||| | || || ||||| || Sbjct 31519480 GGCATCAGTCC-CTGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGAT 31519538 Query 21598 GCCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATC-CAATA 21656 | | || || |||||||| || || | || ||| || || |||| | ||| || | | | Sbjct 31519539 GTCTTCTACAGCAGCAAAGGCCACAACTCTTTCTCCATAGGTAGTCTTTTTGTCTCCAAA 31519598 Query 21657 TCCATTTTTCTGCCCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTA 21716 |||| ||||| | |||| | ||| | |||| ||||| |||||||| || | Sbjct 31519599 TCCAACGCAGGGCCCAGTCAGCCTACTTTTTCACACAAGGCATTGTCTCAATAGCATTGA 31519658 Query 21717 AAAGATGAtttttttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTT 21776 | |||| | | || | ||| | ||| ||| ||||||| Sbjct 31519659 AGAGATATTCCCTCTCTTTGGAATCTTTAATG----TGTCAATGAGGAGACTGTACATTT 31519714 Query 21777 CAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATT 21836 |||||||| | ||||| || || || || || || || ||||| | ||||||| | | Sbjct 31519715 CAGAATGTTTGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGCGGGCCTCTGTAACCT 31519774 Query 21837 GAACCTCGGAATAAAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAA 21896 |||| || ||| || | ||| ||||||||| ||||| ||||||||||| |||| Sbjct 31519775 GAACTTCTTGGCTAAAGCGCTCCACCAGGTTTTCATTGACTATGCCATCACTGGCTGCAA 31519834 Query 21897 AAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTAATTTTTTCCAATCTA 21956 | || |||| | | |||||||| || |||| | | | | || | | | | Sbjct 31519835 AGAAAGCCAGGACGTGAGATATAAAATGTCTCTCGTCAGGTTTCAGCGCTTCCTAGTGTT 31519894 Query 21957 ATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTAT 22016 | ||| || || | || || || |||| |||||| ||| || || || || | Sbjct 31519895 GAATATCCTTGGAGAGGTCCACCTCGTCAGCTGTCCAGAAGAAGGCCTCGGCTTTCTTGT 31519954 Query 22017 ACATAATCCAGATATCATTATATATTATTGGAAA 22050 |||| ||||||||||| ||| || ||||| Sbjct 31519955 ACATCTGCCAGATATCATGGTATTCAATGGGAAA 31519988 >seq42 Length=9663327 Score = 114 bits (126), Expect = 1e-20 Identities = 337/515 (65%), Gaps = 6/515 (1%) Strand=Plus/Minus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 |||| | | || |||||||| || | |||| ||| ||| || |||||||| | ||| Sbjct 3436151 TTTACTCAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCC 3436092 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| | | || | || || || || |||||||| ||||| | ||| ||| Sbjct 3436091 ATCCTCTGATACTTGCCCACGCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATA 3436032 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||| | ||||| |||||||| ||| || || || | | || || || | Sbjct 3436031 TTTTCCATGGAGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAATCCTAGCTCC-AG 3435973 Query 21302 AATAATC-TATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 |||| | | || || || ||||| || || || ||| | || | || ||||| Sbjct 3435972 CATAAGCCTGTCCGCCACGAATTCGATGTAGTGCTTCATCAGGGTGCAGCTTATCCCGAT 3435913 Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420 | || ||||| || || | || | ||| | ||||| | ||| | | ||| Sbjct 3435912 GAGCTTCACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTATCCTCAAGGCGTTGATAAT 3435853 Query 21421 TATATTTATTATCCTAGATGTACTAGGGGGATAC--AATAATTGTTTAAACATCAAACAT 21478 || || || | || || | | || | | | || | ||||||| || Sbjct 3435852 GAT--TTCTTGTACTCTTTGCTCCGGCGGCTTGTGTACCAGGTGCCTGAACATCAGGCAG 3435795 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 ||||| ||||| || ||||| ||||| || || || | || || ||||| || | || Sbjct 3435794 GCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCA 3435735 Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATG 21598 ||||| | ||| | || || | ||| |||||||||||||| | || || ||||| || Sbjct 3435734 GGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGACGCAAAAGAGCCAGAGAAGAAGATC 3435675 Query 21599 CCCTCAACGGCAGCAAATGCAACTAATCGTTCACC 21633 || || || |||||||| || || | |||||| || Sbjct 3435674 CCTTCCACAGCAGCAAAGGCCACAACTCGTTCTCC 3435640 >seq9 Length=86001432 Score = 109 bits (120), Expect = 6e-19 Identities = 390/603 (65%), Gaps = 10/603 (2%) Strand=Plus/Plus Query 21122 TTTATTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCC 21181 |||| | | || |||||||| || | |||| ||| ||| || |||||||| | ||| Sbjct 36369693 TTTACTCAGAAGTCAGCATCCAAGGTGAAAGAATTCTCTGCTGAATTTGACATCACCCCC 36369752 Query 21182 ATTTTTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATA 21241 || | ||||| | | || | || || || || |||||||| ||||| | ||| ||| Sbjct 36369753 ATCCTCTGATACTTGCCCACGCGCTTCTCAAAGAAGTTTGTCTTCCCTTCTAGTGAAATA 36369812 Query 21242 GATTCCATAAAATCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGAT 21301 |||||| | ||||| |||||||| ||| || || || | | || || || | Sbjct 36369813 TTTTCCATGGAGTCAAACGGATTTTCTACTTTGAAAATCTTGCTGAATCCTAGCTCC-AG 36369871 Query 21302 AATAATC-TATCTGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGAT 21360 |||| | | || || || ||||| || || || ||| | || | || ||||| Sbjct 36369872 CATAAGCCTGTCCGCCACGAATTCGATGTAGTGCTTCATCAGGGTGCAGCTTATCCCGAT 36369931 Query 21361 CAATTTTACAGGAAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAAT 21420 | || ||||| || || | || | ||| | ||||| || || | | || Sbjct 36369932 GAGCTTCACAGGCAGGGCCTCCGTGAGAAACTCCTGCTCTATCCTCACTGCGTTGATGAT 36369991 Query 21421 TATATTTATTATCCTAGATGTACTAGGGGGATAC--AATAATTGTTTAAACATCAAACAT 21478 || || || | || || | | || | | | || | ||||||| || Sbjct 36369992 GAT--TTCTTGTACTCTTTGCTCCGGCGGCTTGTGTACCAGGTGCCTGAACATCAGGCAG 36370049 Query 21479 GCAAAATCACAATGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCG 21538 ||||| ||||| || ||||| ||||| || || || | || || ||||| || | || Sbjct 36370050 GCAAAGTCACAGTGTAAACCCTCATCTCTGCTAATAAGCTCGTTGGAAAACGTAAGGCCA 36370109 Query 21539 GGCATTAATCCTCTCTTTTTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATG 21598 ||||| | ||| || | | ||| |||||||||||||| | || | |||| || Sbjct 36370110 GGCATCAGTCCCAGTTTCCTGAGCCAGAATATTGACGCAAAAGAGCC---AGAGAAGATC 36370166 Query 21599 CCCTCAACGGCAGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATC 21658 || || | |||||||| || || | |||||| || || |||| |||||| ||| ||| Sbjct 36370167 CCTTCCATAGCAGCAAAGGCCACAACTCGTTCTCCATAGGTAGCTTCTTTGTCCCCAATC 36370226 Query 21659 CATTTTTCTGCCCATTTTGCCTT-TTCTTTAATACAATCAATTGTATCAATAGCTTTTAA 21717 || ||||| | ||||| || || | |||| ||||| |||||||| || || Sbjct 36370227 CAACGCAGGGCCCAGTCAGCCTTCTTTTTCCACACAAGGCATTGTCTCAATAGCATTGAA 36370286 Query 21718 AAG 21720 || Sbjct 36370287 GAG 36370289 >seq78 Length=2971686 Score = 89.7 bits (98), Expect = 5e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 130716 AATGTCCAATTTTTTGAATCTTCAGAAAAGTAAAAGCATTTATATCCAAATCCAATCCAT 130775 |||||||||||| || |||||||||||||||||| ||||| | ||||||||||||||| Sbjct 2882113 AATGTCCAATTTCTTACATCTTCAGAAAAGTAAAAACATTTGTTTCCAAATCCAATCCAG 2882172 Query 130776 CCCTTTGGGCAAGT 130789 | |||||||| || Sbjct 2882173 TCATTTGGGCATGT 2882186 >seq61 Length=4506808 Score = 89.7 bits (98), Expect = 5e-13 Identities = 94/124 (76%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 21498 CTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCTCTCTTTT 21557 |||||||||| || || | |||||| || || || | |||||||| | |||||||| | Sbjct 586189 CTTCATCCCTGCTGATGAGTTCATTCGAGAAAGTGAGTCCGGGCATGAGGCCTCTCTTCT 586130 Query 21558 TTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGCAGCAAATG 21617 | | ||| || || | ||||||| || || ||||||| ||| || ||||||||||| | Sbjct 586129 TCAGCCAGAAGATAGCAGCAAATGACCCAGAGAAGAAAACGCCTTCCACGGCAGCAAAGG 586070 Query 21618 CAAC 21621 | || Sbjct 586069 CCAC 586066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531858680105400